
Hey Guys, do you want to try the water refinement protocol
and give me some feedback on how is working.  It will take
only around 4-5 min as it will use the farm automatically. 

INSTRUCTIONS:  All you need is FOUR files in a directory
Assuming the name of your protein is  KKK the needed 
files are:
           KKK.pdb          -- best set from XPLOR
           KKK_noe.tbl      -- noe
           KKK_dihe.tbl     -- dihedral
           KKK_hbond.tbl    -- hbonds

nothing more, no inputs, protocols, etc as they will be 
automatically provided by the method.  

In order to run it you 

1.  Log into hummer
2.  go to the directory gathering those files
3.  type    

  /farm/software/WaterRefinement_cns/WaterRefCNS -na KKK -que PBS

ans that's it.  if you have some CIS residue you add -ni NUMRES
to the options above.

In case you want more explanations just type
/farm/software/WaterRefinement_cns/WaterRefCNS
with no options (or only -help as option) and it will give you
some terse explanations.

