View source for Bioinformatics with protein sequence

== SPINE database software ==



SPINE (Structural Proteomics in the NorthEast) is the NESG's project coordination database.  <br>
The SPINE data model closely mirrors the current pepcDB data model with database tables responsible for tracking target, construct, expression, purification, X-Ray and NMR structure data. Spine generates weekly targetDB and pepcDB data depositions which are retrieved by the PSI-KB, generates meta-data required for archiving NESG constructs at the PSI-MR, and provides key NESG protein production pipeline, sample distribution, and structure determination statistics. 

<br> SPINE's Protein Sample Tube (PST) records provide detais about NESG protein samples and link into the samples target, construct, expression, purification, and structure screening SPINE records.

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SPINE provides Bioinformatics information based on the protein sequences, including:
# Competition report
# ZincFinder
# pXs to predict protein crystallography success
# DisMeta - disorder and secondary structure prediction