View source for Spectra Format Conversion from NMRPipe Data

'''Spectra Format Conversion from NMRPipe Processed Data''' 

<br> 

===== NMRPipe to Sparky  =====

:Type the following command in the UNIX terminal 
::For a 2D dataset 'gnhsqc.ft2' ([http://www.nmr2.buffalo.edu/wiki/Routine_2D_Experiment Routine Processing Procedure for 2D Experiment])

:::pipe2ucsf gnhsqc.ft2 gnhsqc.ucsf 
::For a 3D dataset ([http://www.nmr2.buffalo.edu/wiki/Routine_Processing_Procedure_for_3D_15N_and_13C-edited_Experiments Routine Processing Procedure for 3D&nbsp;<sup>15</sup>N and&nbsp;<sup>13</sup>C-edited Experiments])

:::Use xyz2pipe to combine 2D planes into one single PIPE file (Go to the directory where the 3D planes are stored)

::::xyz2pipe -in test%03d.ft3 -x &gt; 3D_HNCO.mat

:::Convert the single PIPE file to UCSF format

::::pipe2ucsf 3D_HNCO.mat 3D_HNCO.ucsf

===== NMRPipe to CARA  =====

===== <br> NMRPipe to XEASY  =====

===== NMRPipe to NMRViewJ  =====

:At the end of the processing script (e.g. ft2d.com or nmrproc.com), insert the following two lines: 
::For 2D dataset ([http://www.nmr2.buffalo.edu/wiki/Routine_2D_Experiment Routine Processing Procedure for 2D Experiment]) 
:::
:::nmrPipe -in gnhsqc.ft2 \ 
:::|pipe2xyz -nv -out filename.nv

::For a 3D dataset ([http://www.nmr2.buffalo.edu/wiki/Routine_Processing_Procedure_for_3D_15N_and_13C-edited_Experiments Routine Processing Procedure for 3D&nbsp;<sup>15</sup>N and&nbsp;<sup>13</sup>C-edited Experiments]) 
:::
:::xyz2pipe -in lp/test%03d.ft3 -x \ 
:::|pipe2xyz -nv -out filename.nv