CARA One Letter File To Seq File - Revision history

Agutmana at 22:40, 9 November 2009

2009-11-09T22:40:07Z

← Older revision		Revision as of 22:40, 9 November 2009
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	Before you create a project you may need to generate an XEASY sequence file. Run "OneLetterFileToSeqFile" Lua script from '''Terminal -> OneLetterFileToSeqFile'''.		Before you create a project you may need to generate an XEASY sequence file. Run "OneLetterFileToSeqFile" Lua script from '''Terminal -> OneLetterFileToSeqFile'''.

	Creating XEASY sequence file:		Creating XEASY sequence file:

	[[Image:CARA One Letter to Seqfile.png]]		[[Image:CARA One Letter to Seqfile.png]]
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	It should be possible to use the sequence produced by UBNMR, but you will need to remove all SRD spin systems from it.		It should be possible to use the sequence produced by UBNMR, but you will need to remove all SRD spin systems from it.

	-- Main.AlexEletski - 07 Mar 2007		-- Main.AlexEletski - 07 Mar 2007

			[[Category:CARA]][[Category:Resonance_Assignment]]

Agutmana at 19:44, 6 November 2009

2009-11-06T19:44:14Z

← Older revision		Revision as of 19:44, 6 November 2009
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	Generating XEASY sequence file		Generating XEASY sequence file

	Before you create a project you may need to generate an XEASY sequence file. Run "OneLetterFileToSeqFile" Lua script from Terminal -> !OneLetterFileToSeqFile.		Before you create a project you may need to generate an XEASY sequence file. Run "OneLetterFileToSeqFile" Lua script from '''Terminal -> OneLetterFileToSeqFile'''.

	Creating XEASY sequence file:		Creating XEASY sequence file:
	~~[[File:CARA_One_Letter_to_Seqfile.png]]~~

	~~In the unlikely case that your template does not contain this script, you can get it here:~~ [~~http://www.cara.ethz.ch/Wiki/CALUA http~~:~~//www.cara.ethz~~.~~ch/Wiki/CALUA~~]		[[Image:CARA One Letter to Seqfile.png]]

	~~This~~ script ~~will open a browser window~~, ~~where~~ you can ~~select the file containing protein sequence as a single line of one-letter codes~~. ~~This line you can copy directly from the target entry in SPINE~~. ~~The filename must be in the form of foo~~.aa.		In the unlikely case that your template does not contain this script, you can get it here: [http://www.cara.ethz.ch/Wiki/CALUA http://www.cara.ethz.ch/Wiki/CALUA]

	~~Then the~~ script will ~~ask~~ you ~~for~~ the ~~name~~ of the ~~output~~ foo.~~seq file~~		This script will open a browser window, where you can select the file containing protein sequence as a single line of one-letter codes. This line you can copy directly from the target entry in SPINE. The filename must be in the form of foo.aa.

	It should be possible to use the sequence produced by UBNMR, but you will need to remove all SRD spin systems from it.		Then the script will ask you for the name of the output foo.seq file

			It should be possible to use the sequence produced by UBNMR, but you will need to remove all SRD spin systems from it.

	-- Main.AlexEletski - 07 Mar 2007		-- Main.AlexEletski - 07 Mar 2007

Agutmana: Created page with 'Generating XEASY sequence file Before you create a project you may need to generate an XEASY sequence file. Run "OneLetterFileToSeqFile" Lua script from Terminal -> !OneLette…'

2009-11-06T19:43:29Z

Created page with 'Generating XEASY sequence file Before you create a project you may need to generate an XEASY sequence file. Run "OneLetterFileToSeqFile" Lua script from Terminal -> !OneLette…'

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Generating XEASY sequence file

Before you create a project you may need to generate an XEASY sequence file. Run "OneLetterFileToSeqFile" Lua script from Terminal -> !OneLetterFileToSeqFile.

Creating XEASY sequence file:
[[File:CARA_One_Letter_to_Seqfile.png]]

In the unlikely case that your template does not contain this script, you can get it here: [http://www.cara.ethz.ch/Wiki/CALUA http://www.cara.ethz.ch/Wiki/CALUA]

This script will open a browser window, where you can select the file containing protein sequence as a single line of one-letter codes. This line you can copy directly from the target entry in SPINE. The filename must be in the form of foo.aa.

Then the script will ask you for the name of the output foo.seq file

It should be possible to use the sequence produced by UBNMR, but you will need to remove all SRD spin systems from it.

-- Main.AlexEletski - 07 Mar 2007