Finding Consensus NOE Assignments - Revision history

Jma at 21:12, 6 January 2010

2010-01-06T21:12:26Z

← Older revision		Revision as of 21:12, 6 January 2010
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	== '''Introduction''' ==		== '''Introduction''' ==

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	1.  Go to one of the MERGE calculation directory, e.g. <tt>~/1_projects/targetID/structure/merge/calc1</tt>, and run <tt>getfil</tt> to get the required files includes NOE assignment from both CYANA and AutoStructure		1.  Go to one of the MERGE calculation directory, e.g. <tt>~/1_projects/targetID/structure/merge/calc1</tt>, and run <tt>getfil</tt> to get the required files includes NOE assignment from both CYANA and AutoStructure

	2.  Run m<span ~~id="1257376075592E"~~ style="display: none;"> </span>acro <tt>run</tt>, which will run the following <tt>EASYNMR</tt> macros (one can also run any individual macro from below depend on the need):		2.  Run m<span style="display: none;" id="1257376075592E"> </span>acro <tt>run</tt>, which will run the following <tt>EASYNMR</tt> macros (one can also run any individual macro from below depend on the need):

	*prot2auto: Modifying XEASY format atom list by replace the atom name by using BMRB atom name;		*prot2auto: Modifying XEASY format atom list by replace the atom name by using BMRB atom name;
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	*V13HG1-V13QCG-V13H - unique assignment, V13HG1-V13CG1-V13H		*V13HG1-V13QCG-V13H - unique assignment, V13HG1-V13CG1-V13H

	<br>'''~~Comments:~~'''~~  <span class="commentPlugin commentPluginOutputOneliner">* Shall we include all consensus NOEs or only the long-rang consensus NOEs for further calculations? (gaohua) </span>~~		<br>'''<br>'''

	~~<br>~~

	~~<span class="commentPlugin commentPluginOutputOneliner">-- Main.GaohuaLiu - 27 Jul 2008 - </span><!--/commentPlugin-->~~

	~~-- Edited by JimAramini - Nov 2009~~

	<br>		<br>

Jma at 22:01, 5 November 2009

2009-11-05T22:01:11Z

← Older revision		Revision as of 22:01, 5 November 2009
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	~~= '''Finding Consensus NOE Assignments''' =~~

	== '''Introduction''' ==		== '''Introduction''' ==
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	*The UBNMR consRun command will produce four files:		*The UBNMR consRun command will produce four files:

	#An xeasy peaklist starting with "consRun" that contains the assignments for matched (and reserved) peaks.		#An xeasy peaklist starting with "consRun" that contains the assignments for matched (and reserved) peaks.
	#An xeasy ".assign" file which contains the assignments for unmatched peaks plus any multiple assignments.		#An xeasy ".assign" file which contains the assignments for unmatched peaks plus any multiple assignments.
	#A log file showing the actual input for each matched peak.		#A log file showing the actual input for each matched peak.
	#A log file showing the actual input for each unmatched peak.		#A log file showing the actual input for each unmatched peak.

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	<pre> awk -f peaks2sparky.awk noe.seq noe_sw.prot noe_consensus.peaks > noe_sparky.list		<pre> awk -f peaks2sparky.awk noe.seq noe_sw.prot noe_consensus.peaks > noe_sparky.list
	</pre>		</pre>
	In order to load the consensus peak list onto the simNoesy spectrum in XEASY we must first convert the N shifts back to Carbon frequencies and then join the peak lists, a macro to do this is attached below, '''macrojoin'''		In order to load the consensus peak list onto the simNoesy spectrum in XEASY we must first convert the N shifts back to Carbon frequencies and then join the peak lists, a macro to do this is attached below, '''macrojoin'''

	== '''Using CARA''' ==		== '''Using CARA''' ==
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	== '''Using EASYNMR''' ==		== '''Using EASYNMR''' ==

	1.  Go to one of the MERGE calculation directory, e.g. <tt>~/1_projects/targetID/structure/merge/calc1</tt>, and run <tt>getfil</tt> to get the required files includes NOE assignment from both CYANA and AutoStructure		1.  Go to one of the MERGE calculation directory, e.g. <tt>~/1_projects/targetID/structure/merge/calc1</tt>, and run <tt>getfil</tt> to get the required files includes NOE assignment from both CYANA and AutoStructure

	2.  Run m<span style="display: none;~~" id="1257376075592E~~"> </span>acro <tt>run</tt>, which will run the following <tt>EASYNMR</tt> macros (one can also run any individual macro from below depend on the need):		2.  Run m<span id="1257376075592E" style="display: none;"> </span>acro <tt>run</tt>, which will run the following <tt>EASYNMR</tt> macros (one can also run any individual macro from below depend on the need):

	*prot2auto: Modifying XEASY format atom list by replace the atom name by using BMRB atom name;		*prot2auto: Modifying XEASY format atom list by replace the atom name by using BMRB atom name;
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	***diffn1.assign (peaks that both assigned but not match).		***diffn1.assign (peaks that both assigned but not match).

	<br>		<br>

	== '''Key Issues''' ==		== '''Key Issues''' ==

Jma: moved FindingConsensusNOEAssignments to Finding Consensus NOE Assignments

2009-11-05T21:58:15Z

moved FindingConsensusNOEAssignments to Finding Consensus NOE Assignments

← Older revision	Revision as of 21:58, 5 November 2009
(No difference)

Jma at 23:07, 4 November 2009

2009-11-04T23:07:28Z

← Older revision		Revision as of 23:07, 4 November 2009
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	== '''Using EASYNMR''' ==		== '''Using EASYNMR''' ==

	#Go to one of the MERGE calculation directory, e.g. <tt>~/1_projects/targetID/structure/merge/calc1</tt>, and run <tt>getfil</tt> to get the required files includes NOE assignment from both CYANA and AutoStructure		1.  Go to one of the MERGE calculation directory, e.g. <tt>~/1_projects/targetID/structure/merge/calc1</tt>, and run <tt>getfil</tt> to get the required files includes NOE assignment from both CYANA and AutoStructure
	~~#Run macro <tt>run</tt>, which will run the following <tt>EASYNMR</tt> macros (one can also run any individual macro from below depend on the need):~~

	*		2.  Run m<span style="display: none;" id="1257376075592E"> </span>acro <tt>run</tt>, which will run the following <tt>EASYNMR</tt> macros (one can also run any individual macro from below depend on the need):
	*prot2auto: Modifying XEASY format atom list by replace the atom name by using BMRB atom name;
	*auto2easy: reformatting the NOE assignment file fro AutoStructure;		*prot2auto: Modifying XEASY format atom list by replace the atom name by using BMRB atom name;
	*runc13: Converting the NOE assignment file of 13C NOESY peak list from AutoStructure format to XEASY format peak lists.		*auto2easy: reformatting the NOE assignment file fro AutoStructure;
	*runn15: Converting the NOE assignment file of 15N NOESY peak list from AutoStructure format to XEASY format peak lists		*runc13: Converting the NOE assignment file of 13C NOESY peak list from AutoStructure format to XEASY format peak lists.
	*runautonew: Selecting the newly assigned NOE peaks by exclude the simulated peaks those were already assigned.		*runn15: Converting the NOE assignment file of 15N NOESY peak list from AutoStructure format to XEASY format peak lists
	*cyana2easy: Converting the CYANA assigned peak list to XEASY format and selecting the newly assigned NOE peaks by excluded the simulated peaks		*runautonew: Selecting the newly assigned NOE peaks by exclude the simulated peaks those were already assigned.
			*cyana2easy: Converting the CYANA assigned peak list to XEASY format and selecting the newly assigned NOE peaks by excluded the simulated peaks
	*runc13B: Comparing the NOE assignment of 13C peak list, adapting the consensus NOE assignment and merging to the original XEASY format peak list, and write out:		*runc13B: Comparing the NOE assignment of 13C peak list, adapting the consensus NOE assignment and merging to the original XEASY format peak list, and write out:
	**a complete merged XEASY PeakList <tt>autocyanaxeasycnoe.peaks</tt> that used for further consensus or manual analysis;		**a complete merged XEASY PeakList <tt>autocyanaxeasycnoe.peaks</tt> that used for further consensus or manual analysis;
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	**two XEASY format assignment files that contan non-consensus NOE assignment from both programs and can be loaded back to XEASY for anslysis:		**two XEASY format assignment files that contan non-consensus NOE assignment from both programs and can be loaded back to XEASY for anslysis:
	***diffc.assign (all peaks that not match);		***diffc.assign (all peaks that not match);
	***diffc1.assign (peaks that both assigned but not match).		***diffc1.assign (peaks that both assigned but not match).
	*runn15B: Comparing the NOE assignment of 15N peak list, adapting the consensus NOE assignment and merging to the original XEASY format peak list, write out:		*runn15B: Comparing the NOE assignment of 15N peak list, adapting the consensus NOE assignment and merging to the original XEASY format peak list, write out:
	**a complete merged XEASY PeakList <tt>autocyanaxeasynnoe.peaks</tt> that used for further consensus or manual analysis;		**a complete merged XEASY PeakList <tt>autocyanaxeasynnoe.peaks</tt> that used for further consensus or manual analysis;

Jma at 23:05, 4 November 2009

2009-11-04T23:05:37Z

← Older revision		Revision as of 23:05, 4 November 2009
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	#Go to one of the MERGE calculation directory, e.g. <tt>~/1_projects/targetID/structure/merge/calc1</tt>, and run <tt>getfil</tt> to get the required files includes NOE assignment from both CYANA and AutoStructure		#Go to one of the MERGE calculation directory, e.g. <tt>~/1_projects/targetID/structure/merge/calc1</tt>, and run <tt>getfil</tt> to get the required files includes NOE assignment from both CYANA and AutoStructure
	#Run macro <tt>run</tt>, which will run the following <tt>EASYNMR</tt> macros (one can also run any individual macro from below depend on the need):		#Run macro <tt>run</tt>, which will run the following <tt>EASYNMR</tt> macros (one can also run any individual macro from below depend on the need):
	**prot2auto: Modifying XEASY format atom list by replace the atom name by using BMRB atom name;
	**auto2easy: reformatting the NOE assignment file fro AutoStructure;		*
	**runc13: Converting the NOE assignment file of 13C NOESY peak list from AutoStructure format to XEASY format peak lists.		*prot2auto: Modifying XEASY format atom list by replace the atom name by using BMRB atom name;
	**runn15: Converting the NOE assignment file of 15N NOESY peak list from AutoStructure format to XEASY format peak lists		*auto2easy: reformatting the NOE assignment file fro AutoStructure;
	**runautonew: Selecting the newly assigned NOE peaks by exclude the simulated peaks those were already assigned.		*runc13: Converting the NOE assignment file of 13C NOESY peak list from AutoStructure format to XEASY format peak lists.
	**cyana2easy: Converting the CYANA assigned peak list to XEASY format and selecting the newly assigned NOE peaks by excluded the simulated peaks		*runn15: Converting the NOE assignment file of 15N NOESY peak list from AutoStructure format to XEASY format peak lists
	**runc13B: Comparing the NOE assignment of 13C peak list, adapting the consensus NOE assignment and merging to the original XEASY format peak list, and write out:		*runautonew: Selecting the newly assigned NOE peaks by exclude the simulated peaks those were already assigned.
	***a complete merged XEASY PeakList <tt>autocyanaxeasycnoe.peaks</tt> that used for further consensus or manual analysis;		*cyana2easy: Converting the CYANA assigned peak list to XEASY format and selecting the newly assigned NOE peaks by excluded the simulated peaks
	***a partially PeakList <tt>autocyanacnoenew.peaks</tt> that only contains consensus peaks;		*runc13B: Comparing the NOE assignment of 13C peak list, adapting the consensus NOE assignment and merging to the original XEASY format peak list, and write out:
	***two XEASY format assignment files that contan non-consensus NOE assignment from both programs and can be loaded back to XEASY for anslysis:		**a complete merged XEASY PeakList <tt>autocyanaxeasycnoe.peaks</tt> that used for further consensus or manual analysis;
	****diffc.assign (all peaks that not match);		**a partially PeakList <tt>autocyanacnoenew.peaks</tt> that only contains consensus peaks;
	****diffc1.assign (peaks that both assigned but not match).		**two XEASY format assignment files that contan non-consensus NOE assignment from both programs and can be loaded back to XEASY for anslysis:
	**runn15B: Comparing the NOE assignment of 15N peak list, adapting the consensus NOE assignment and merging to the original XEASY format peak list, write out:		***diffc.assign (all peaks that not match);
	***a complete merged XEASY PeakList <tt>autocyanaxeasynnoe.peaks</tt> that used for further consensus or manual analysis;		***diffc1.assign (peaks that both assigned but not match).
	***a partially PeakList <tt>autocyanannoenew.peaks</tt> that only contains consensus peaks;		*runn15B: Comparing the NOE assignment of 15N peak list, adapting the consensus NOE assignment and merging to the original XEASY format peak list, write out:
	***two XEASY format assignment files that contan non-consensus NOE assignment from both programs and can be loaded back to XEASY for anslysis:		**a complete merged XEASY PeakList <tt>autocyanaxeasynnoe.peaks</tt> that used for further consensus or manual analysis;
	****diffn.assign (all peaks that not match);		**a partially PeakList <tt>autocyanannoenew.peaks</tt> that only contains consensus peaks;
	****diffn1.assign (peaks that both assigned but not match).		**two XEASY format assignment files that contan non-consensus NOE assignment from both programs and can be loaded back to XEASY for anslysis:
			***diffn.assign (all peaks that not match);
			***diffn1.assign (peaks that both assigned but not match).

	<br>		<br>

Jma at 23:03, 4 November 2009

2009-11-04T23:03:26Z

← Older revision		Revision as of 23:03, 4 November 2009
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	*NOTE the UBNMR consRun assumes that the same original peaklist was used for both the cyana and autostructure runs. It also assumes that the peaks in your peaklist are in ascending order. If this is not true, a FATAL ERROR will result.		*NOTE the UBNMR consRun assumes that the same original peaklist was used for both the cyana and autostructure runs. It also assumes that the peaks in your peaklist are in ascending order. If this is not true, a FATAL ERROR will result.
	*The UBNMR consRun command will produce four files:		*The UBNMR consRun command will produce four files:
	##An xeasy peaklist starting with "consRun" that contains the assignments for matched (and reserved) peaks.
	##An xeasy ".assign" file which contains the assignments for unmatched peaks plus any multiple assignments.		#An xeasy peaklist starting with "consRun" that contains the assignments for matched (and reserved) peaks.
	##A log file showing the actual input for each matched peak.		#An xeasy ".assign" file which contains the assignments for unmatched peaks plus any multiple assignments.
	##A log file showing the actual input for each unmatched peak.		#A log file showing the actual input for each matched peak.
			#A log file showing the actual input for each unmatched peak.

	*See [[UbnmrConsensusDetails\|UbnmrConsensusDetails]] for details on the consensus run matching algorithm.		*See [[UbnmrConsensusDetails\|UbnmrConsensusDetails]] for details on the consensus run matching algorithm.
	*Convert XEASY/CYANA format PeakList to Sparky format as following by using [[Media:Consensus_peaks2sparky.awk\|XeasytoSparky]] if needed:		*Convert XEASY/CYANA format PeakList to Sparky format as following by using [[Media:Consensus_peaks2sparky.awk\|XeasytoSparky]] if needed:

Jma at 23:02, 4 November 2009

2009-11-04T23:02:35Z

Jma at 23:00, 4 November 2009

2009-11-04T23:00:44Z

← Older revision		Revision as of 23:00, 4 November 2009
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	#Go to one of the MERGE calculation directory, e.g. <tt>~/1_projects/targetID/structure/merge/calc1</tt>, and run <tt>getfil</tt> to get the required files includes NOE assignment from both CYANA and AutoStructure		#Go to one of the MERGE calculation directory, e.g. <tt>~/1_projects/targetID/structure/merge/calc1</tt>, and run <tt>getfil</tt> to get the required files includes NOE assignment from both CYANA and AutoStructure
	#Run macro <tt>run</tt>, which will run the following <tt>EASYNMR</tt> macros (one can also run any individual macro from below depend on the need):		#Run macro <tt>run</tt>, which will run the following <tt>EASYNMR</tt> macros (one can also run any individual macro from below depend on the need):

	**prot2auto: Modifying XEASY format atom list by replace the atom name by using BMRB atom name;		**prot2auto: Modifying XEASY format atom list by replace the atom name by using BMRB atom name;
	**auto2easy: reformatting the NOE assignment file fro AutoStructure;		**auto2easy: reformatting the NOE assignment file fro AutoStructure;
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	****diffn1.assign (peaks that both assigned but not match).		****diffn1.assign (peaks that both assigned but not match).

	<br>		<br>

	== '''Key Issues''' ==		== '''Key Issues''' ==

Jma at 20:36, 4 November 2009

2009-11-04T20:36:09Z

← Older revision		Revision as of 20:36, 4 November 2009
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	cp ../../autos/calc1/CYCLE8-1_final/cnoe4abs.peaks_assSparky .		cp ../../autos/calc1/CYCLE8-1_final/cnoe4abs.peaks_assSparky .
	cp ../../autos/calc1/CYCLE8-1_final/nnoe4abs.peaks_assSparky .</pre>		cp ../../autos/calc1/CYCLE8-1_final/nnoe4abs.peaks_assSparky .</pre>
	*Run UBNMR with macro <tt>[[~~media~~:~~ConsRun~~.mac\|~~consRun~~.mac]]</tt> or step by step as describe below		*Run UBNMR with macro <tt>[[Media:consrun.mac\|consrun.mac]]</tt> or step by step as describe below
	*Start UBNMR and load your XEASY/CYANA format sequence file SequenceList and chemical shift filet AtomList.		*Start UBNMR and load your XEASY/CYANA format sequence file SequenceList and chemical shift filet AtomList.
	*Run the UBNMR command: consRun [originalPeaklist] [cyanaPeaklist] [sparkyAssList] [-R ####] , where #### is an xeasy peak number. All peaks with peak numbers less than ### will be "reserved". That is, the assignment from the original peaklist will be used independant of the new cyana and autostructure assignments.		*Run the UBNMR command: consRun [originalPeaklist] [cyanaPeaklist] [sparkyAssList] [-R ####] , where #### is an xeasy peak number. All peaks with peak numbers less than ### will be "reserved". That is, the assignment from the original peaklist will be used independant of the new cyana and autostructure assignments.
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	<pre> awk -f peaks2sparky.awk noe.seq noe_sw.prot noe_consensus.peaks > noe_sparky.list		<pre> awk -f peaks2sparky.awk noe.seq noe_sw.prot noe_consensus.peaks > noe_sparky.list
	</pre>		</pre>
	In order to load the consensus peak list onto the simNoesy spectrum in XEASY we must first convert the N shifts back to Carbon frequencies and then join the peak lists, a macro to do this is attached below, '''macrojoin'''		In order to load the consensus peak list onto the simNoesy spectrum in XEASY we must first convert the N shifts back to Carbon frequencies and then join the peak lists, a macro to do this is attached below, '''macrojoin'''

	== '''Using CARA''' ==		== '''Using CARA''' ==

Jma at 20:35, 4 November 2009

2009-11-04T20:35:11Z

← Older revision		Revision as of 20:35, 4 November 2009
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	== '''Introduction''' ==		== '''Introduction''' ==

	By comparing the results from the programs CYANA and AutoStructure, identical NOE assignment are found and are regarded as correct NOE. Manual refinement can thus be focused mostly on the remaining peaks. Consensus peaklists can be created with UBNMR, [[~~media~~:~~easynmr2008a~~\|EASYNMR]], CARA/LUA or David's perl scripts. Ulitmately, UBNMR and CARA/LUA scripts should contain the accepted protocol and the other scripts will be abandoned.		By comparing the results from the programs CYANA and AutoStructure, identical NOE assignment are found and are regarded as correct NOE. Manual refinement can thus be focused mostly on the remaining peaks. Consensus peaklists can be created with UBNMR, [[Media:Easynmr2008a\|EASYNMR]], CARA/LUA or David's perl scripts. Ulitmately, UBNMR and CARA/LUA scripts should contain the accepted protocol and the other scripts will be abandoned.

	If you ran your calculations on a cluster, download the results into local directory tree.		If you ran your calculations on a cluster, download the results into local directory tree.
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	cp ../../autos/calc1/CYCLE8-1_final/cnoe4abs.peaks_assSparky .		cp ../../autos/calc1/CYCLE8-1_final/cnoe4abs.peaks_assSparky .
	cp ../../autos/calc1/CYCLE8-1_final/nnoe4abs.peaks_assSparky .</pre>		cp ../../autos/calc1/CYCLE8-1_final/nnoe4abs.peaks_assSparky .</pre>
	*Run UBNMR with macro <tt>[[~~NESG~~:ConsRun.mac\|consRun.mac]]</tt> or step by step as describe below		*Run UBNMR with macro <tt>[[media:ConsRun.mac\|consRun.mac]]</tt> or step by step as describe below
	*Start UBNMR and load your XEASY/CYANA format sequence file SequenceList and chemical shift filet AtomList.		*Start UBNMR and load your XEASY/CYANA format sequence file SequenceList and chemical shift filet AtomList.
	*Run the UBNMR command: consRun [originalPeaklist] [cyanaPeaklist] [sparkyAssList] [-R ####] , where #### is an xeasy peak number. All peaks with peak numbers less than ### will be "reserved". That is, the assignment from the original peaklist will be used independant of the new cyana and autostructure assignments.		*Run the UBNMR command: consRun [originalPeaklist] [cyanaPeaklist] [sparkyAssList] [-R ####] , where #### is an xeasy peak number. All peaks with peak numbers less than ### will be "reserved". That is, the assignment from the original peaklist will be used independant of the new cyana and autostructure assignments.
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	<pre> awk -f peaks2sparky.awk noe.seq noe_sw.prot noe_consensus.peaks > noe_sparky.list		<pre> awk -f peaks2sparky.awk noe.seq noe_sw.prot noe_consensus.peaks > noe_sparky.list
	</pre>		</pre>
	In order to load the consensus peak list onto the simNoesy spectrum in XEASY we must first convert the N shifts back to Carbon frequencies and then join the peak lists, a macro to do this is attached below, '''macrojoin'''		In order to load the consensus peak list onto the simNoesy spectrum in XEASY we must first convert the N shifts back to Carbon frequencies and then join the peak lists, a macro to do this is attached below, '''macrojoin'''

	== '''Using CARA''' ==		== '''Using CARA''' ==

← Older revision		Revision as of 23:02, 4 November 2009
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	cp ../../autos/calc1/CYCLE8-1_final/cnoe4abs.peaks_assSparky .		cp ../../autos/calc1/CYCLE8-1_final/cnoe4abs.peaks_assSparky .
	cp ../../autos/calc1/CYCLE8-1_final/nnoe4abs.peaks_assSparky .</pre>		cp ../../autos/calc1/CYCLE8-1_final/nnoe4abs.peaks_assSparky .</pre>
	*Run UBNMR with macro <tt>[[Media:~~consrun~~.mac\|consrun.mac]]</tt> or step by step as describe below		*Run UBNMR with macro <tt>[[Media:Consrun.mac\|consrun.mac]]</tt> or step by step as describe below
	*Start UBNMR and load your XEASY/CYANA format sequence file SequenceList and chemical shift filet AtomList.		*Start UBNMR and load your XEASY/CYANA format sequence file SequenceList and chemical shift filet AtomList.
	*Run the UBNMR command: consRun [originalPeaklist] [cyanaPeaklist] [sparkyAssList] [-R ####] , where #### is an xeasy peak number. All peaks with peak numbers less than ### will be "reserved". That is, the assignment from the original peaklist will be used independant of the new cyana and autostructure assignments.		*Run the UBNMR command: consRun [originalPeaklist] [cyanaPeaklist] [sparkyAssList] [-R ####] , where #### is an xeasy peak number. All peaks with peak numbers less than ### will be "reserved". That is, the assignment from the original peaklist will be used independant of the new cyana and autostructure assignments.
	*NOTE the UBNMR consRun assumes that the same original peaklist was used for both the cyana and autostructure runs. It also assumes that the peaks in your peaklist are in ascending order. If this is not true, a FATAL ERROR will result.		*NOTE the UBNMR consRun assumes that the same original peaklist was used for both the cyana and autostructure runs. It also assumes that the peaks in your peaklist are in ascending order. If this is not true, a FATAL ERROR will result.
	*The UBNMR consRun command will produce four files:		*The UBNMR consRun command will produce four files:

	##An xeasy peaklist starting with "consRun" that contains the assignments for matched (and reserved) peaks.		##An xeasy peaklist starting with "consRun" that contains the assignments for matched (and reserved) peaks.
	##An xeasy ".assign" file which contains the assignments for unmatched peaks plus any multiple assignments.		##An xeasy ".assign" file which contains the assignments for unmatched peaks plus any multiple assignments.
	##A log file showing the actual input for each matched peak.		##A log file showing the actual input for each matched peak.
	##A log file showing the actual input for each unmatched peak.		##A log file showing the actual input for each unmatched peak.

	*See [[UbnmrConsensusDetails\|UbnmrConsensusDetails]] for details on the consensus run matching algorithm.		*See [[UbnmrConsensusDetails\|UbnmrConsensusDetails]] for details on the consensus run matching algorithm.
	*Convert XEASY/CYANA format PeakList to Sparky format as following by using [[Media:Consensus_peaks2sparky.awk\|XeasytoSparky]] if needed:		*Convert XEASY/CYANA format PeakList to Sparky format as following by using [[Media:Consensus_peaks2sparky.awk\|XeasytoSparky]] if needed: