Loading New Template in CARA - Revision history

Agutmana: moved CARA New Template to Loading New Template in CARA

2009-11-09T22:38:44Z

moved CARA New Template to Loading New Template in CARA

← Older revision	Revision as of 22:38, 9 November 2009
(No difference)

Agutmana at 22:27, 9 November 2009

2009-11-09T22:27:37Z

← Older revision		Revision as of 22:27, 9 November 2009
Line 18:		Line 18:
	*Key modifications are:		*Key modifications are:
	*Residue type definitions		*Residue type definitions
	**Added linker residue definitions to facilitate treatment of homodimers		**Added linker residue definitions to facilitate treatment of homodimers
	*Spectrum type definitions		*Spectrum type definitions
	**Added definitions of (4,3)D HNNCABCA, (4,3)D CABCA(CO)NHN and (4,3)D HABCAB(CO)NHN		**Added definitions of (4,3)D HNNCABCA, (4,3)D CABCA(CO)NHN and (4,3)D HABCAB(CO)NHN
	*Spectrum attributes		*Spectrum attributes
	**Added attributes for GFT spectra - used by Lua scripts		**Added attributes for GFT spectra - used by Lua scripts
	*Lua scripts		*Lua scripts
	**CreateConsensusPeaklist - consensus peaklist from two loaded peak lists		**CreateConsensusPeaklist - consensus peaklist from two loaded peak lists

Agutmana at 19:38, 6 November 2009

2009-11-06T19:38:39Z

← Older revision		Revision as of 19:38, 6 November 2009
Line 15:		Line 15:
	==== GFT Template ====		==== GFT Template ====

	*[[Media:BoR54_template.cara][BoR54_template.cara]]: Latest GFT template for BoR54 project		*[[Media:BoR54_template.cara\|BoR54_template.cara]]: Latest GFT template for BoR54 project
	*Key modifications are:		*Key modifications are:
	*Residue type definitions		*Residue type definitions

Agutmana: moved NESG:CARANewTemplate to CARA New Template

2009-11-06T19:27:08Z

moved NESG:CARANewTemplate to CARA New Template

← Older revision	Revision as of 19:27, 6 November 2009
(No difference)

Agutmana at 19:26, 6 November 2009

2009-11-06T19:26:56Z

← Older revision		Revision as of 19:26, 6 November 2009
Line 1:		Line 1:
	=== ~~ ~~Loading a New Template ===		=== Loading a New Template ===

	To start a new structure determination project in CARA you need to load a template.		To start a new structure determination project in CARA you need to load a template.
Line 11:		Line 11:
	The template can be opened by clicking File -> Open		The template can be opened by clicking File -> Open

	<br>[[~~File~~:CARA New Template Dialogue.png]]		<br>[[Image:CARA New Template Dialogue.png]]

	==== GFT Template ====		==== GFT Template ====

Agutmana at 19:25, 6 November 2009

2009-11-06T19:25:56Z

← Older revision		Revision as of 19:25, 6 November 2009
Line 11:		Line 11:
	The template can be opened by clicking File -> Open		The template can be opened by clicking File -> Open

	<br>~~file_open~~.png		<br>[[File:CARA New Template Dialogue.png]]

	==== GFT Template ====		==== GFT Template ====

	*[[Media:BoR54_template.cara]]: Latest GFT template for BoR54 project		*[[Media:BoR54_template.cara][BoR54_template.cara]]: Latest GFT template for BoR54 project
	*Key modifications are:		*Key modifications are:
	*Residue type definitions		*Residue type definitions

Agutmana at 19:22, 6 November 2009

2009-11-06T19:22:24Z

← Older revision		Revision as of 19:22, 6 November 2009
Line 15:		Line 15:
	==== GFT Template ====		==== GFT Template ====

	*[[~~%PUBURLPATH%/%WEB%/CARA/BoR54_template.cara][~~BoR54_template.cara]]: Latest GFT template for BoR54 project		*[[Media:BoR54_template.cara]]: Latest GFT template for BoR54 project
	*Key modifications are:		*Key modifications are:
	*Residue type definitions		*Residue type definitions

Agutmana at 19:20, 6 November 2009

2009-11-06T19:20:15Z

Agutmana: Created page with '=== Loading a New Template === To start a new structure determination project in CARA you need to load a template. For details see here: [http://www.cara.ethz.ch/Wiki/Imp…'

2009-11-06T19:19:26Z

Created page with '=== Loading a New Template === To start a new structure determination project in CARA you need to load a template. For details see here: [http://www.cara.ethz.ch/Wiki/Imp…'

New page

===  Loading a New Template ===

To start a new structure determination project in CARA you need to load a template.

For details see here: [http://www.cara.ethz.ch/Wiki/ImportingTemplate http://www.cara.ethz.ch/Wiki/ImportingTemplate]

==== Default Template ====

For conventional NMR spectroscopy you can use the latest default template from the CARA web-site [http://www.cara.ethz.ch/Wiki/TemplatesPage http://www.cara.ethz.ch/Wiki/TemplatesPage]

The template can be opened by clicking File -> Open

<br>file_open.png

==== GFT Template ====

*[[%PUBURLPATH%/%WEB%/CARA/BoR54_template.cara][BoR54_template.cara]]: Latest GFT template for BoR54 project
*Key modifications are:
*Residue type definitions
**Added linker residue definitions to facilitate treatment of homodimers
*Spectrum type definitions
**Added definitions of (4,3)D HNNCABCA, (4,3)D CABCA(CO)NHN and (4,3)D HABCAB(CO)NHN
*Spectrum attributes
**Added attributes for GFT spectra - used by Lua scripts
*Lua scripts
**CreateConsensusPeaklist - consensus peaklist from two loaded peak lists
**CreateSequentialSpinLinks
**ExportSeqToAutostructure - prepare sequence in Autostructure format
**ExportToMain.AutoAssign - generate all files for AutoAssign input
**ExportToMain.CSI - generate CSI input file
**GFT_aroHCCH_calc - small applet too calculate aromatic side-chain spin in (4,3)D HCCH-COSY
**GFT_HCCH_calc - small applet too calculate aliphatic side-chain spin in (4,3)D HCCH-COSY
**GFT_CABCA2CACB - calculate CA and CB from sum and difference shifts
**ImportCyana2xPeakList - import peaklist in CYANA 2.x format (with multiple assignments)
**ImportSparkyPeakList - import peaklist in Sparky format (from AutoStructure)
**ImportFromMain.AutoAssign - read assignments produced by AutoAssign
**and more... (I'll expand the list if I get time - AlexEletski)

Template from a Previous Repository

Alternatively, you can click File -> New from template... to open an existing template or repository as a template. This would discard any projects existing in the repository.

-- Main.AlexEletski - 07 Mar 2007

← Older revision		Revision as of 19:20, 6 November 2009
Line 1:		Line 1:
	===  Loading a New Template ===		===  Loading a New Template ===

	To start a new structure determination project in CARA you need to load a template.		To start a new structure determination project in CARA you need to load a template.

	For details see here: [http://www.cara.ethz.ch/Wiki/ImportingTemplate http://www.cara.ethz.ch/Wiki/ImportingTemplate]		For details see here: [http://www.cara.ethz.ch/Wiki/ImportingTemplate http://www.cara.ethz.ch/Wiki/ImportingTemplate]

	==== Default Template ====		==== Default Template ====

	For conventional NMR spectroscopy you can use the latest default template from the CARA web-site [http://www.cara.ethz.ch/Wiki/TemplatesPage http://www.cara.ethz.ch/Wiki/TemplatesPage]		For conventional NMR spectroscopy you can use the latest default template from the CARA web-site [http://www.cara.ethz.ch/Wiki/TemplatesPage http://www.cara.ethz.ch/Wiki/TemplatesPage]

	The template can be opened by clicking File -> Open		The template can be opened by clicking File -> Open

	<br>file_open.png		<br>file_open.png

	==== GFT Template ====		==== GFT Template ====

	*[[%PUBURLPATH%/%WEB%/CARA/BoR54_template.cara][BoR54_template.cara]]: Latest GFT template for BoR54 project		*[[%PUBURLPATH%/%WEB%/CARA/BoR54_template.cara][BoR54_template.cara]]: Latest GFT template for BoR54 project
	*Key modifications are:		*Key modifications are:
	*Residue type definitions		*Residue type definitions
	**Added linker residue definitions to facilitate treatment of homodimers		**Added linker residue definitions to facilitate treatment of homodimers
	*Spectrum type definitions		*Spectrum type definitions
	**Added definitions of (4,3)D HNNCABCA, (4,3)D CABCA(CO)NHN and (4,3)D HABCAB(CO)NHN		**Added definitions of (4,3)D HNNCABCA, (4,3)D CABCA(CO)NHN and (4,3)D HABCAB(CO)NHN
	*Spectrum attributes		*Spectrum attributes
	**Added attributes for GFT spectra - used by Lua scripts		**Added attributes for GFT spectra - used by Lua scripts
	*Lua scripts		*Lua scripts
	**CreateConsensusPeaklist - consensus peaklist from two loaded peak lists		**CreateConsensusPeaklist - consensus peaklist from two loaded peak lists
	**CreateSequentialSpinLinks		**CreateSequentialSpinLinks
	**ExportSeqToAutostructure - prepare sequence in Autostructure format		**ExportSeqToAutostructure - prepare sequence in Autostructure format
	**ExportToMain.AutoAssign - generate all files for AutoAssign input		**ExportToMain.AutoAssign - generate all files for AutoAssign input
	**ExportToMain.CSI - generate CSI input file		**ExportToMain.CSI - generate CSI input file
	**GFT_aroHCCH_calc - small applet too calculate aromatic side-chain spin in (4,3)D HCCH-COSY		**GFT_aroHCCH_calc - small applet too calculate aromatic side-chain spin in (4,3)D HCCH-COSY
	**GFT_HCCH_calc - small applet too calculate aliphatic side-chain spin in (4,3)D HCCH-COSY		**GFT_HCCH_calc - small applet too calculate aliphatic side-chain spin in (4,3)D HCCH-COSY
	**GFT_CABCA2CACB - calculate CA and CB from sum and difference shifts		**GFT_CABCA2CACB - calculate CA and CB from sum and difference shifts
	**ImportCyana2xPeakList - import peaklist in CYANA 2.x format (with multiple assignments)		**ImportCyana2xPeakList - import peaklist in CYANA 2.x format (with multiple assignments)
	**ImportSparkyPeakList - import peaklist in Sparky format (from AutoStructure)		**ImportSparkyPeakList - import peaklist in Sparky format (from AutoStructure)
	**ImportFromMain.AutoAssign - read assignments produced by AutoAssign		**ImportFromMain.AutoAssign - read assignments produced by AutoAssign
	**and more... (I'll expand the list if I get time - AlexEletski)		**and more... (I'll expand the list if I get time - AlexEletski)

	Template from a Previous Repository		==== Template from a Previous Repository ====

	Alternatively, you can click File -> New from template... to open an existing template or repository as a template. This would discard any projects existing in the repository.		Alternatively, you can click File -> New from template... to open an existing template or repository as a template. This would discard any projects existing in the repository.

	-- Main.AlexEletski - 07 Mar 2007		-- Main.AlexEletski - 07 Mar 2007