SPINS - Revision history

Jma at 16:58, 5 January 2010

2010-01-05T16:58:06Z

← Older revision		Revision as of 16:58, 5 January 2010
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	== '''Introduction''' ==		== '''Introduction''' ==

	SPINS (Standardizing Protein NMR Storage) is an object oriented relational database used in the Montelione group for high-throughput NMR data storage, analysis and submission [1].		SPINS (Standardizing Protein NMR Storage) is an object oriented relational database used in the Montelione group for high-throughput NMR data storage, analysis and submission [1].

	== '''Uses''' ==		== '''Uses''' ==
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	[http://www.ncbi.nlm.nih.gov/pubmed/16395675?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4 1. Baran, M., Moseley, H.N.B., Aramini, J.M., Bayro, M.J., Monleon, D., Locke, J. and Montelione, G.T. (2006) SPINS: A laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determination.  ''PROTEINS 62'', 843 – 851.]		[http://www.ncbi.nlm.nih.gov/pubmed/16395675?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4 1. Baran, M., Moseley, H.N.B., Aramini, J.M., Bayro, M.J., Monleon, D., Locke, J. and Montelione, G.T. (2006) SPINS: A laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determination.  ''PROTEINS 62'', 843 – 851.]

	<br>		<br>

	~~--JimAramini- 03 Nov 2009~~

Jma at 15:59, 5 January 2010

2010-01-05T15:59:43Z

← Older revision		Revision as of 15:59, 5 January 2010
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	== '''Introduction''' ==		== '''Introduction''' ==

	SPINS (Standardizing Protein NMR Storage) is an object oriented relational database used in the Montelione group for high-throughput NMR data storage, analysis and submission ~~[http://www.ncbi.nlm.nih.gov/pubmed/16395675?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4~~ [1]].		SPINS (Standardizing Protein NMR Storage) is an object oriented relational database used in the Montelione group for high-throughput NMR data storage, analysis and submission [1].

	== '''Uses''' ==		== '''Uses''' ==

Jma at 15:57, 5 January 2010

2010-01-05T15:57:46Z

← Older revision		Revision as of 15:57, 5 January 2010
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	== '''Introduction''' ==		== '''Introduction''' ==

	SPINS (Standardizing Protein NMR Storage) is an object oriented relational database used in the Montelione group for high-throughput NMR data storage, analysis and submission [1].		SPINS (Standardizing Protein NMR Storage) is an object oriented relational database used in the Montelione group for high-throughput NMR data storage, analysis and submission [http://www.ncbi.nlm.nih.gov/pubmed/16395675?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4 [1]].

	== '''Uses''' ==		== '''Uses''' ==

Jma at 18:35, 23 December 2009

2009-12-23T18:35:41Z

← Older revision		Revision as of 18:35, 23 December 2009
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	== '''References''' ==		== '''References''' ==

	[http://www.ncbi.nlm.nih.gov/pubmed/16395675?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4 Baran, M., Moseley, H.N.B., Aramini, J.M., Bayro, M.J., Monleon, D., Locke, J. and Montelione, G.T. (2006) SPINS: A laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determination.  ''PROTEINS 62'', 843 – 851.]		[http://www.ncbi.nlm.nih.gov/pubmed/16395675?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4 1. Baran, M., Moseley, H.N.B., Aramini, J.M., Bayro, M.J., Monleon, D., Locke, J. and Montelione, G.T. (2006) SPINS: A laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determination.  ''PROTEINS 62'', 843 – 851.]

	<br>		<br>

	--JimAramini- 03 Nov 2009		--JimAramini- 03 Nov 2009

Jma at 18:34, 23 December 2009

2009-12-23T18:34:33Z

← Older revision		Revision as of 18:34, 23 December 2009
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	== '''Introduction''' ==		== '''Introduction''' ==

	SPINS (Standardizing Protein NMR Storage) is an object oriented relational database used in the Montelione group for high-throughput NMR data storage, analysis and submission~~<references />~~.		SPINS (Standardizing Protein NMR Storage) is an object oriented relational database used in the Montelione group for high-throughput NMR data storage, analysis and submission [1].

	== '''Uses''' ==		== '''Uses''' ==

Jma at 18:30, 23 December 2009

2009-12-23T18:30:26Z

← Older revision		Revision as of 18:30, 23 December 2009
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	== '''Introduction''' ==		== '''Introduction''' ==

	SPINS (Standardizing Protein NMR Storage) is an object oriented relational database used in the Montelione group for high-throughput NMR data storage, analysis and submission.		SPINS (Standardizing Protein NMR Storage) is an object oriented relational database used in the Montelione group for high-throughput NMR data storage, analysis and submission<references />.

	== '''Uses''' ==		== '''Uses''' ==
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	== '''References''' ==		== '''References''' ==

	Baran, M., Moseley, H.N.B., Aramini, J.M., Bayro, M.J., Monleon, D., Locke, J. and Montelione, G.T. (2006) SPINS: A laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determination.  ''PROTEINS 62'', 843 – 851.		[http://www.ncbi.nlm.nih.gov/pubmed/16395675?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4 Baran, M., Moseley, H.N.B., Aramini, J.M., Bayro, M.J., Monleon, D., Locke, J. and Montelione, G.T. (2006) SPINS: A laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determination.  ''PROTEINS 62'', 843 – 851.]

	<br>		<br>

	--JimAramini- 03 Nov 2009		--JimAramini- 03 Nov 2009

Jma at 21:40, 5 November 2009

2009-11-05T21:40:12Z

← Older revision		Revision as of 21:40, 5 November 2009
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	~~= '''SPINS database''' =~~

	== '''Introduction''' ==		== '''Introduction''' ==
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	[[Image:SPINS toolspage.png\|600x320px]]		[[Image:SPINS toolspage.png\|600x320px]]

			<br>

	== '''References''' ==		== '''References''' ==

Jma at 23:29, 3 November 2009

2009-11-03T23:29:20Z

← Older revision		Revision as of 23:29, 3 November 2009
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	== '''References''' ==		== '''References''' ==

	Baran, M., Moseley, H.N.B., Aramini, J.M., Bayro, M.J., Monleon, D., Locke, J. and Montelione, G.T. (2006) SPINS: A laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determination.  PROTEINS 62, 843 – 851.		Baran, M., Moseley, H.N.B., Aramini, J.M., Bayro, M.J., Monleon, D., Locke, J. and Montelione, G.T. (2006) SPINS: A laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determination.  ''PROTEINS 62'', 843 – 851.

	<br>		<br>

	--JimAramini- 03 Nov 2009		--JimAramini- 03 Nov 2009

Jma at 23:28, 3 November 2009

2009-11-03T23:28:54Z

← Older revision		Revision as of 23:28, 3 November 2009
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	[[Image:SPINS toolspage.png\|600x320px]]		[[Image:SPINS toolspage.png\|600x320px]]



	== '''References''' ==		== '''References''' ==

	Baran, M., Moseley, H.N.B., Aramini, J.M., Bayro, M.J., Monleon, D., Locke, J. and Montelione, G.T.~~<span style="font-weight: bold;">~~ (2006) SPINS: A laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determination.  ~~</span>'''~~PROTEINS ~~'''~~62, 843 – 851.		Baran, M., Moseley, H.N.B., Aramini, J.M., Bayro, M.J., Monleon, D., Locke, J. and Montelione, G.T. (2006) SPINS: A laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determination.  PROTEINS 62, 843 – 851.


			<br>

	--JimAramini- 03 Nov 2009		--JimAramini- 03 Nov 2009

Jma: Created page with '= '''SPINS database''' = == '''Introduction''' == SPINS (Standardizing Protein NMR Storage) is an object oriented relational database used in the Montelione group for hi…'

2009-11-03T23:27:35Z

Created page with '= '''SPINS database''' = == '''Introduction''' == SPINS (Standardizing Protein NMR Storage) is an object oriented relational database used in the Montelione group for hi…'

New page

= '''SPINS database''' =

== '''Introduction''' ==

SPINS (Standardizing Protein NMR Storage) is an object oriented relational database used in the Montelione group for high-throughput NMR data storage, analysis and submission.

== '''Uses''' ==

SPINS features useful tools for archiving of FIDs for structure determination projects.  Furthermore, the exact pulse sequence experiments used in the data collection are captured by SPINS.

SPINS also has a tool for submission of time domain NMR data for a structure project to BMRB under a given BMRB ID.

== '''SPINS Interface''' ==

The main page of the SPINS interface is shown in Figure 1.  The main page features several functions including, input of NMR data, inserting NMR pulse sequences, and a project manage.   Clicking the "help" link provides a complete manual in pdf format.

==== Figure 1:  SPINS interface ====

[[Image:SPINS mainpage.png|600x450px]]

Common functions used in creating and managing structure determination projects include the multiple FID insert tool (Figure 2), the project manager (Figure 3) and the tools page which includes a function for transmitting NMR data in a SPINS project to the BMRB (Figure 4).

==== Figure 2:  FID insert tool<br> ====

[[Image:SPINS insertpage.png|600x300px]]

==== Figure 3:  Project Manager<br> ====

[[Image:SPINS projectpage.png|600x400px]]

==== Figure 4:  BMRB tool ====

[[Image:SPINS toolspage.png|600x320px]]

== '''References''' ==

Baran, M., Moseley, H.N.B., Aramini, J.M., Bayro, M.J., Monleon, D., Locke, J. and Montelione, G.T.<span style="font-weight: bold;"> (2006) SPINS: A laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determination.  </span>'''PROTEINS '''62, 843 – 851. 

--JimAramini- 03 Nov 2009