Spin System Identification with CARA - Revision history

Agutmana at 17:15, 6 November 2009

2009-11-06T17:15:32Z

Agutmana: moved CARA Spin System Identification to Spin System Identification with CARA

2009-11-06T17:06:29Z

moved CARA Spin System Identification to Spin System Identification with CARA

← Older revision	Revision as of 17:06, 6 November 2009
(No difference)

Agutmana: moved NESG:CARASpinSystemIdentification to CARA Spin System Identification

2009-11-06T16:58:25Z

moved NESG:CARASpinSystemIdentification to CARA Spin System Identification

← Older revision	Revision as of 16:58, 6 November 2009
(No difference)

Admin: Created page with '== '''Spin System Identification with CARA''' == Spin system identification in 2D [15N,1H]-HSQC and 3D HNCO # Open a repositiry or create one if it does not exist (see the CARA…'

2009-10-09T17:44:34Z

Created page with '== '''Spin System Identification with CARA''' == Spin system identification in 2D [15N,1H]-HSQC and 3D HNCO # Open a repositiry or create one if it does not exist (see the CARA…'

New page

== '''Spin System Identification with CARA''' ==

Spin system identification in 2D [15N,1H]-HSQC and 3D HNCO

# Open a repositiry or create one if it does not exist (see the CARA page).
# Open 2D [15N,1H]-HSQC in SynchroScope to determine the region with true peak region and noise level.
# Run Lua script '''Pick_2D_Peaks'''. This script should be in the repository, otherwise get it from http://www.cara.ethz.ch/Wiki/AllCaluaScripts . '''Pick_2D_Peaks''' is equivalent to the <tt>in</tt> command in XEASY, but is not interactive. The script will create spin systems and populate them with H and N spins. Note that in CARA spin systems are distinct from residues and can have numbers starting with 1.
# To delete unwanted spin systems in SynchroScope use '''right click -> Delete Systems'''. To pick additional spin systems use '''right click -> Pick System'''
# Open 3D HNCO in the strip panels of SynchroScope by using '''Strips -> Select Spectrum''' or '''right click -> Select Spectrum'''
# Select a spin system by left-clicking in HSQC plane or using '''View -> Goto System''' - this updates the strip display.
# In the strip panel set the cursor on a peak and use '''right click -> Pick Label...''' or '''right click -> Pick Spin''' and '''right click -> Label Spin''' to pick C-1. Repeat last two steps for all spin systems.

Also see instructions on how to use SynchroScope here:
http://www.cara.ethz.ch/Wiki/SynchroScope

%COMMENT%

-- Main.AlexEletski - 06 Jul 2007

← Older revision		Revision as of 17:15, 6 November 2009
Line 1:		Line 1:
	== '''Spin System Identification with CARA''' ==		== '''Spin System Identification with CARA''' ==

	Spin system identification in 2D [15N,1H]-HSQC and 3D HNCO		Spin system identification in 2D [15N,1H]-HSQC and 3D HNCO

	# Open a repositiry or create one if it does not exist (see the CARA page).		#Open a repositiry or create one if it does not exist (see the CARA page).
	# Open 2D [15N,1H]-HSQC in SynchroScope to determine the region with true peak region and noise level.		#Open 2D [15N,1H]-HSQC in SynchroScope to determine the region with true peak region and noise level.
	# Run Lua script '''Pick_2D_Peaks'''. This script should be in the repository, otherwise get it from http://www.cara.ethz.ch/Wiki/AllCaluaScripts . '''Pick_2D_Peaks''' is equivalent to the <tt>in</tt> command in XEASY, but is not interactive. The script will create spin systems and populate them with H and N spins. Note that in CARA spin systems are distinct from residues and can have numbers starting with 1.		#Run Lua script '''Pick_2D_Peaks'''. This script should be in the repository, otherwise get it from http://www.cara.ethz.ch/Wiki/AllCaluaScripts . '''Pick_2D_Peaks''' is equivalent to the <tt>in</tt> command in XEASY, but is not interactive. The script will create spin systems and populate them with H and N spins. Note that in CARA spin systems are distinct from residues and can have numbers starting with 1.
	# To delete unwanted spin systems in SynchroScope use '''right click -> Delete Systems'''. To pick additional spin systems use '''right click -> Pick System'''		#To delete unwanted spin systems in SynchroScope use '''right click -> Delete Systems'''. To pick additional spin systems use '''right click -> Pick System'''
	# Open 3D HNCO in the strip panels of SynchroScope by using '''Strips -> Select Spectrum''' or '''right click -> Select Spectrum'''		#Open 3D HNCO in the strip panels of SynchroScope by using '''Strips -> Select Spectrum''' or '''right click -> Select Spectrum'''
	# Select a spin system by left-clicking in HSQC plane or using '''View -> Goto System''' - this updates the strip display.		#Select a spin system by left-clicking in HSQC plane or using '''View -> Goto System''' - this updates the strip display.
	# In the strip panel set the cursor on a peak and use '''right click -> Pick Label...''' or '''right click -> Pick Spin''' and '''right click -> Label Spin''' to pick C-1. Repeat last two steps for all spin systems.		#In the strip panel set the cursor on a peak and use '''right click -> Pick Label...''' or '''right click -> Pick Spin''' and '''right click -> Label Spin''' to pick C-1. Repeat last two steps for all spin systems.

	Also see instructions on how to use SynchroScope here:		Also see instructions on how to use SynchroScope here: http://www.cara.ethz.ch/Wiki/SynchroScope
	http://www.cara.ethz.ch/Wiki/SynchroScope

	~~%COMMENT%~~


			<br>

			<br>-- Main.AlexEletski - 06 Jul 2007
	-- Main.AlexEletski - 06 Jul 2007