Target selection - Revision history

TheresaRamelot at 22:30, 10 December 2009

2009-12-10T22:30:55Z

← Older revision		Revision as of 22:30, 10 December 2009
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	<br>As part of the NIH funded PSI-2 project, the NESG dedicates 70% of its resources to the determination of targeted families selected by the [http://psi-big4.org PSI BIG, 30% to targets nominated by the academic community and 30% to its own biomedically oriented projects such as key proteins in [http://nesg.org:9090/HCPIN/index.jsp Human cancer interaction networks] and bacterial lipoproteins.		<br>As part of the NIH funded PSI-2 project, the NESG dedicates 70% of its resources to the determination of targeted families selected by the [http://psi-big4.org PSI BIG], 30% to targets nominated by the academic community and 30% to its own biomedically oriented projects such as key proteins in [http://nesg.org:9090/HCPIN/index.jsp Human cancer interaction networks] and bacterial lipoproteins.

	Throughout PSI-2, protein families proposed by the PSI BIG group have been selected by the PSI-2 large scale centers via a lottery system overseen by the PSI BIG group. Members of protein families selected by the BIG group are studied by the large scale centers prior to family selection and each center proposes families that they wish to pursue. The PSI BIG group resolves conflicts where more than one large scale center proposes to study the same protein family.		Throughout PSI-2, protein families proposed by the PSI BIG group have been selected by the PSI-2 large scale centers via a lottery system overseen by the PSI BIG group. Members of protein families selected by the BIG group are studied by the large scale centers prior to family selection and each center proposes families that they wish to pursue. The PSI BIG group resolves conflicts where more than one large scale center proposes to study the same protein family.

TheresaRamelot at 22:30, 10 December 2009

2009-12-10T22:30:04Z

@@ Line 1: / Line 1: @@
-<br>As part of the NIH funded PSI-2 project, the NESG dedicates 70%&nbsp;of its resources to the determination of targeted families selected by the [http://psi-big4.org PSI&nbsp;BIG&nbsp;group], <br>30% to targets nominated by the <!--[if gte mso 10]>
+<br>As part of the NIH funded PSI-2 project, the NESG dedicates 70% of its resources to the determination of targeted families selected by the [http://psi-big4.org PSI BIG, 30% to targets nominated by the academic community and 30% to its own biomedically oriented projects such as key proteins in [http://nesg.org:9090/HCPIN/index.jsp Human cancer interaction networks] and bacterial lipoproteins.
-Throughout PSI-2, protein families proposed by the PSI&nbsp;BIG&nbsp;group have been selected by the PSI-2 large scale centers via a lottery system overseen by the <br>PSI&nbsp;BIG&nbsp;group.&nbsp; Members of protein families selected by the BIG&nbsp;group are studied by the large scale centers prior to family selection and each center proposes<br>families that they wish to pursue.&nbsp; The PSI&nbsp;BIG&nbsp;group <!--[if gte mso 10]>
+Throughout PSI-2, protein families proposed by the PSI BIG group have been selected by the PSI-2 large scale centers via a lottery system overseen by the PSI BIG group. Members of protein families selected by the BIG group are studied by the large scale centers prior to family selection and each center proposes families that they wish to pursue. The PSI BIG group resolves conflicts where more than one large scale center proposes to study the same protein family.
-Before selecting a protein family, the NESG evaluates family members with a number of <!--[if gte mso 10]>
+Before selecting a protein family, the NESG evaluates family members with a number of predictors:
 *[http://nmr.cabm.rutgers.edu:8080/PXS/calculatePXS.jsp Pxs]

JohnEverett at 19:54, 1 December 2009

2009-12-01T19:54:34Z

← Older revision		Revision as of 19:54, 1 December 2009
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	<br>		<br>

	~~Result~~ of PSI-2 protein family drafts:		Results of PSI-2 protein family drafts:

	*[http://psi-big4.org/target/draft_2005-10/ Draft pick of 1369 Pfam families (Oct 2005)]		*[http://psi-big4.org/target/draft_2005-10/ Draft pick of 1369 Pfam families (Oct 2005)]

JohnEverett at 19:53, 1 December 2009

2009-12-01T19:53:52Z

← Older revision		Revision as of 19:53, 1 December 2009
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	<br>As part of the NIH funded PSI-2 project, the NESG dedicates 70% of its resources to the determination of targeted families ~~assigned~~ by the [http://psi-big4.org PSI BIG group], <br>30% to targets nominated by the <!--[if gte mso 10]>		<br>As part of the NIH funded PSI-2 project, the NESG dedicates 70% of its resources to the determination of targeted families selected by the [http://psi-big4.org PSI BIG group], <br>30% to targets nominated by the <!--[if gte mso 10]>
	<style>		<style>
	/* Style Definitions */		/* Style Definitions */

JohnEverett at 19:52, 1 December 2009

2009-12-01T19:52:32Z

← Older revision		Revision as of 19:52, 1 December 2009
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	*[http://psi-big4.org/target/small_mega_2007-06/ Selection of 4 small MEGA families (June 2007)]		*[http://psi-big4.org/target/small_mega_2007-06/ Selection of 4 small MEGA families (June 2007)]
	*[http://psi-big4.org/target/midsize_mega_2007-12/ Draft selection of 4 mid size MEGA families (Dec 2007)<br>]		*[http://psi-big4.org/target/midsize_mega_2007-12/ Draft selection of 4 mid size MEGA families (Dec 2007)<br>]
	*~~[http://psi-big4.org/target/midsize_mega_2007-12/]~~[http://psi-big4.org/target/super_mega_2007-12/3.40.50.720/ Draft pick of NAD(P)-binding Rossmann domain (Dec 2007)]		*[http://psi-big4.org/target/super_mega_2007-12/3.40.50.720/ Draft pick of NAD(P)-binding Rossmann domain (Dec 2007)]
	*[http://psi-big4.org/target/super_mega_2007-12/3.20.20.70/ Draft pick of Aldolase Class I (Dec 2007)]		*[http://psi-big4.org/target/super_mega_2007-12/3.20.20.70/ Draft pick of Aldolase Class I (Dec 2007)]
	*[http://psi-big4.org/target/super_mega_2007-12/3.40.50.150/ Draft pick of VP39 (Dec 2007)]		*[http://psi-big4.org/target/super_mega_2007-12/3.40.50.150/ Draft pick of VP39 (Dec 2007)]

JohnEverett at 17:12, 1 December 2009

2009-12-01T17:12:28Z

← Older revision		Revision as of 17:12, 1 December 2009
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	mso-bidi-language:#0400;}		mso-bidi-language:#0400;}
	</style>		</style>
	<![endif]--><span>academic</span> community and 30% to its own <span>biomedicaly</span> oriented projects such as key proteins in Human cancer interaction<br>networks and bacterial lipoproteins.		<![endif]--><span>academic</span> community and 30% to its own <span>biomedicaly</span> oriented projects such as key proteins in [http://nesg.org:9090/HCPIN/index.jsp Human cancer interaction<br>networks] and bacterial lipoproteins.

	Throughout PSI-2, protein families proposed by the PSI BIG group have been selected by the PSI-2 large scale centers via a lottery system overseen by the <br>PSI BIG group.  Members of protein families selected by the BIG group are studied by the large scale centers prior to family selection and each center proposes<br>families that they wish to pursue.  The PSI BIG group <!--[if gte mso 10]>		Throughout PSI-2, protein families proposed by the PSI BIG group have been selected by the PSI-2 large scale centers via a lottery system overseen by the <br>PSI BIG group.  Members of protein families selected by the BIG group are studied by the large scale centers prior to family selection and each center proposes<br>families that they wish to pursue.  The PSI BIG group <!--[if gte mso 10]>

JohnEverett at 17:10, 1 December 2009

2009-12-01T17:10:46Z

Show changes

JohnEverett at 17:07, 1 December 2009

2009-12-01T17:07:51Z

Show changes

JohnEverett at 17:05, 1 December 2009

2009-12-01T17:05:49Z

← Older revision		Revision as of 17:05, 1 December 2009
Line 3:		Line 3:
	Throughout PSI-2, protein families proposed by the PSI BIG group have been selected by the PSI-2 large scale centers via a lottery system overseen by the <br>PSI BIG group.  Members of protein families selected by the BIG group are studied by the large scale centers prior to family selection and each center proposes<br>families that they wish to pursue.  The PSI BIG group resovles conflicts where more than one large scale center prposes the same protein family.		Throughout PSI-2, protein families proposed by the PSI BIG group have been selected by the PSI-2 large scale centers via a lottery system overseen by the <br>PSI BIG group.  Members of protein families selected by the BIG group are studied by the large scale centers prior to family selection and each center proposes<br>families that they wish to pursue.  The PSI BIG group resovles conflicts where more than one large scale center prposes the same protein family.

	Before selecting a protein family, the NESG evaluates family members with a number of predicters:		Before selecting a protein family, the NESG evaluates family members with a number of predicters:

	*Pxs		*[http://nmr.cabm.rutgers.edu:8080/PXS/calculatePXS.jsp Pxs]
	*signalP		*[http://www.cbs.dtu.dk/services/SignalP/ signalP]
	*lipoP		*[http://www.cbs.dtu.dk/services/LipoP/ lipoP]
	*TMHMM		*[http://www.cbs.dtu.dk/services/TMHMM/ TMHMM]
	*PredictProtein		*[http://www.predictprotein.org/ PredictProtein]
	*disopred		*[http://bioinf.cs.ucl.ac.uk/disopred/ disopred2]

			<br>

			Result of PSI-2 protein family drafts:

	~~Result of PSI-2 protein family drafts:[http://psi-big4.org/target/draft_2005-10/ ]~~		*[http://psi-big4.org/target/draft_2005-10/ Draft pick of 1369 Pfam families (Oct 2005)]
			*[http://psi-big4.org/target/draft_2006-04/ Draft pick of 397 BIG families (Apr 2006)]
	*[http://psi-big4.org/target/draft_2005-10/ Draft pick of 1369 Pfam families (Oct 2005)]		*[http://psi-big4.org/target/draft_2006-08/ Draft pick of 460 BIG families (Aug 2006)]
	*[http://psi-big4.org/target/draft_2006-04/ Draft pick of 397 BIG families (Apr 2006)]		*[http://psi-big4.org/target/draft_2006-11/ Draft pick of 602 BIG families (Nov 2006)]
	*[http://psi-big4.org/target/draft_2006-08/ Draft pick of 460 BIG families (Aug 2006)]		*[http://psi-big4.org/target/small_mega_2007-03/ Selection of 3 small MEGA families (March 2007)]
	*[http://psi-big4.org/target/draft_2006-11/ Draft pick of 602 BIG families (Nov 2006)]		*[http://psi-big4.org/target/draft_2007-05/ First round draft pick of p-loop super MEGA (May 2007)]
	*[http://psi-big4.org/target/small_mega_2007-03/ Selection of 3 small MEGA families (March 2007)]		*[http://psi-big4.org/target/draft_2007-06/ Second round draft pick of p-loop super MEGA (June 2007)]
	*[http://psi-big4.org/target/draft_2007-05/ First round draft pick of p-loop super MEGA (May 2007)]		*[http://psi-big4.org/target/draft_2007-06_gut/ First round META genome draft pick (June 2007)]
	*[http://psi-big4.org/target/draft_2007-06/ Second round draft pick of p-loop super MEGA (June 2007)]		*[http://psi-big4.org/target/small_mega_2007-06/ Selection of 4 small MEGA families (June 2007)]
	*[http://psi-big4.org/target/draft_2007-06_gut/ First round META genome draft pick (June 2007)]		*[http://psi-big4.org/target/midsize_mega_2007-12/ Draft selection of 4 mid size MEGA families (Dec 2007)<br>]
	*[http://psi-big4.org/target/small_mega_2007-06/ Selection of 4 small MEGA families (June 2007)]		*[http://psi-big4.org/target/midsize_mega_2007-12/][http://psi-big4.org/target/super_mega_2007-12/3.40.50.720/ Draft pick of NAD(P)-binding Rossmann domain (Dec 2007)]
	*[http://psi-big4.org/target/midsize_mega_2007-12/ Draft selection of 4 mid size MEGA families (Dec 2007)<br>]		*[http://psi-big4.org/target/super_mega_2007-12/3.20.20.70/ Draft pick of Aldolase Class I (Dec 2007)]
	*[http://psi-big4.org/target/midsize_mega_2007-12/ ][http://psi-big4.org/target/super_mega_2007-12/3.40.50.720/ Draft pick of NAD(P)-binding Rossmann domain (Dec 2007)]		*[http://psi-big4.org/target/super_mega_2007-12/3.40.50.150/ Draft pick of VP39 (Dec 2007)]
	*[http://psi-big4.org/target/super_mega_2007-12/3.20.20.70/ Draft pick of Aldolase Class I (Dec 2007)]		*[http://psi-big4.org/target/draft_2008-05/ Draft pick of 1000 MEGA modeling families (250/center) (May 2008)]
	*[http://psi-big4.org/target/super_mega_2007-12/3.40.50.150/ Draft pick of VP39 (Dec 2007)]		*[http://psi-big4.org/target/draft_2008-07/ Draft pick of 136 META HMM families (34/center) (July 2008)]
	*[http://psi-big4.org/target/draft_2008-05/ Draft pick of 1000 MEGA modeling families (250/center) (May 2008)]
	*[http://psi-big4.org/target/draft_2008-07/ Draft pick of 136 META HMM families (34/center) (July 2008)]
	*[http://psi-big4.org/target/draft_2008-07_mega/ Draft pick of 1000 MEGA modeling families (250/center) (July 2008)]		*[http://psi-big4.org/target/draft_2008-07_mega/ Draft pick of 1000 MEGA modeling families (250/center) (July 2008)]

JohnEverett at 17:02, 1 December 2009

2009-12-01T17:02:28Z

← Older revision		Revision as of 17:02, 1 December 2009
Line 3:		Line 3:
	Throughout PSI-2, protein families proposed by the PSI BIG group have been selected by the PSI-2 large scale centers via a lottery system overseen by the <br>PSI BIG group.  Members of protein families selected by the BIG group are studied by the large scale centers prior to family selection and each center proposes<br>families that they wish to pursue.  The PSI BIG group resovles conflicts where more than one large scale center prposes the same protein family.		Throughout PSI-2, protein families proposed by the PSI BIG group have been selected by the PSI-2 large scale centers via a lottery system overseen by the <br>PSI BIG group.  Members of protein families selected by the BIG group are studied by the large scale centers prior to family selection and each center proposes<br>families that they wish to pursue.  The PSI BIG group resovles conflicts where more than one large scale center prposes the same protein family.

	Result of PSI-2 protein family drafts:		Before selecting a protein family, the NESG evaluates family members with a number of predicters:
	~~<blockquote>~~
	*[http://psi-big4.org/target/draft_2005-10/ Draft pick of 1369 Pfam families (Oct 2005)]		*Pxs
	*[http://psi-big4.org/target/draft_2006-04/ Draft pick of 397 BIG families (Apr 2006)]		*signalP
	*[http://psi-big4.org/target/draft_2006-08/ Draft pick of 460 BIG families (Aug 2006)]		*lipoP
	*[http://psi-big4.org/target/draft_2006-11/ Draft pick of 602 BIG families (Nov 2006)]		*TMHMM
	*[http://psi-big4.org/target/small_mega_2007-03/ Selection of 3 small MEGA families (March 2007)]		*PredictProtein
	*[http://psi-big4.org/target/draft_2007-05/ First round draft pick of p-loop super MEGA (May 2007)]		*disopred
	*[http://psi-big4.org/target/draft_2007-06/ Second round draft pick of p-loop super MEGA (June 2007)]
	*[http://psi-big4.org/target/draft_2007-06_gut/ First round META genome draft pick (June 2007)]
	*[http://psi-big4.org/target/small_mega_2007-06/ Selection of 4 small MEGA families (June 2007)]
	*[http://psi-big4.org/target/midsize_mega_2007-12/ Draft selection of 4 mid size MEGA families (Dec 2007)]		Result of PSI-2 protein family drafts:[http://psi-big4.org/target/draft_2005-10/ ]
	*[http://psi-big4.org/target/super_mega_2007-12/3.40.50.720/ Draft pick of NAD(P)-binding Rossmann domain (Dec 2007)]
	*[http://psi-big4.org/target/super_mega_2007-12/3.20.20.70/ Draft pick of Aldolase Class I (Dec 2007)]		*[http://psi-big4.org/target/draft_2005-10/ Draft pick of 1369 Pfam families (Oct 2005)]
	*[http://psi-big4.org/target/super_mega_2007-12/3.40.50.150/ Draft pick of VP39 (Dec 2007)]		*[http://psi-big4.org/target/draft_2006-04/ Draft pick of 397 BIG families (Apr 2006)]
	*[http://psi-big4.org/target/draft_2008-05/ Draft pick of 1000 MEGA modeling families (250/center) (May 2008)]		*[http://psi-big4.org/target/draft_2006-08/ Draft pick of 460 BIG families (Aug 2006)]
	*[http://psi-big4.org/target/draft_2008-07/ Draft pick of 136 META HMM families (34/center) (July 2008)]		*[http://psi-big4.org/target/draft_2006-11/ Draft pick of 602 BIG families (Nov 2006)]
			*[http://psi-big4.org/target/small_mega_2007-03/ Selection of 3 small MEGA families (March 2007)]
			*[http://psi-big4.org/target/draft_2007-05/ First round draft pick of p-loop super MEGA (May 2007)]
			*[http://psi-big4.org/target/draft_2007-06/ Second round draft pick of p-loop super MEGA (June 2007)]
			*[http://psi-big4.org/target/draft_2007-06_gut/ First round META genome draft pick (June 2007)]
			*[http://psi-big4.org/target/small_mega_2007-06/ Selection of 4 small MEGA families (June 2007)]
			*[http://psi-big4.org/target/midsize_mega_2007-12/ Draft selection of 4 mid size MEGA families (Dec 2007)<br>]
			*[http://psi-big4.org/target/midsize_mega_2007-12/ ][http://psi-big4.org/target/super_mega_2007-12/3.40.50.720/ Draft pick of NAD(P)-binding Rossmann domain (Dec 2007)]
			*[http://psi-big4.org/target/super_mega_2007-12/3.20.20.70/ Draft pick of Aldolase Class I (Dec 2007)]
			*[http://psi-big4.org/target/super_mega_2007-12/3.40.50.150/ Draft pick of VP39 (Dec 2007)]
			*[http://psi-big4.org/target/draft_2008-05/ Draft pick of 1000 MEGA modeling families (250/center) (May 2008)]
			*[http://psi-big4.org/target/draft_2008-07/ Draft pick of 136 META HMM families (34/center) (July 2008)]
	*[http://psi-big4.org/target/draft_2008-07_mega/ Draft pick of 1000 MEGA modeling families (250/center) (July 2008)]		*[http://psi-big4.org/target/draft_2008-07_mega/ Draft pick of 1000 MEGA modeling families (250/center) (July 2008)]
	~~</blockquote>~~