Create Project From Sequence File in CARA: Difference between revisions
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It is possible to start a project from scratch. You can also start a project from a BMRB deposition file, for example, downloaded from the BMRB web site. | It is possible to start a project from scratch. You can also start a project from a BMRB deposition file, for example, downloaded from the BMRB web site. | ||
However, assuming that you are working on a new protein, you will likely need to start from an XEASY sequence file. To do that you will need to right-lick on the Projects tab, select Import Project from Sequence from the context menu and provide a *.seq file. | However, assuming that you are working on a new protein, you will likely need to start from an [[XEASY]] sequence file. To do that you will need to right-lick on the '''Projects''' tab, select '''Import Project from Sequence '''from the context menu and provide a *.seq file. | ||
I will have to confirm that the sequence file represents residues, not abstract spin systems, as expected for a "true" sequence. | I will have to confirm that the sequence file represents residues, not abstract spin systems, as expected for a "true" sequence. | ||
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*Create a project from sequence file:<br> [[Image:CARA | *Create a project from sequence file:<br> [[Image:CARA proj import from seq.png]] | ||
This will create a project entry with the same name as the *.seq file, with the sequence field appropriately filled and all other fields empty. You can also rename a project at any time. | This will create a project entry with the same name as the *.seq file, with the sequence field appropriately filled and all other fields empty. You can also rename a project at any time. | ||
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*Created project:<br> [[Image:CARA | *Created project:<br> [[Image:CARA new project.png]] | ||
In principle, a repository can contain several projects. However, many common Lua scripts assume that there is a single project in a repository. Therefore, creating several projects in a single repository is not encouraged. | In principle, a repository can contain several projects. However, many common Lua scripts assume that there is a single project in a repository. Therefore, creating several projects in a single repository is not encouraged. | ||
Latest revision as of 22:40, 9 November 2009
Starting a New Project
It is possible to start a project from scratch. You can also start a project from a BMRB deposition file, for example, downloaded from the BMRB web site.
However, assuming that you are working on a new protein, you will likely need to start from an XEASY sequence file. To do that you will need to right-lick on the Projects tab, select Import Project from Sequence from the context menu and provide a *.seq file.
I will have to confirm that the sequence file represents residues, not abstract spin systems, as expected for a "true" sequence.
- Create a project from sequence file:
This will create a project entry with the same name as the *.seq file, with the sequence field appropriately filled and all other fields empty. You can also rename a project at any time.
- Created project:
In principle, a repository can contain several projects. However, many common Lua scripts assume that there is a single project in a repository. Therefore, creating several projects in a single repository is not encouraged.
See also this page on importing Xeasy *.seq files: http://www.cara.ethz.ch/Wiki/WorkingWithOtherProgramsImportExport
-- Main.AlexEletski - 07 Mar 2007