XEASY Sequence List: Difference between revisions
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== '''Sequence List''' == | == '''Sequence List''' == | ||
The XEASY sequence list defines the primary sequence of the biomolecule. In the initial phases of an assignment cycle, it is advantageous to use generic spin-system names such as | The XEASY sequence list defines the primary sequence of the biomolecule. In the initial phases of an assignment cycle, it is advantageous to use generic spin-system names such as <span class="WYSIWYG_TT">SS</span> for conventional spectra or <span class="WYSIWYG_TT">SRD</span> for reduced dimensionality spectra and GFT spectra. The sequence file will contain only the residue type and the residue number (shown below). | ||
<span class="WYSIWYG_TT">SS</span> | |||
for conventional spectra or | |||
<span class="WYSIWYG_TT">SRD</span> | |||
for reduced dimensionality spectra and GFT spectra. The sequence file will contain only the residue type and the residue number (shown below) | |||
*'''Example of XEASY sequence list.''' <br> | |||
<pre>... | |||
SRD 201 | |||
SRD 202 | |||
SRD 203 | |||
SRD 204 | |||
SRD 205 | |||
SRD 206 | |||
SRD 207 | |||
SRD 208 | |||
SRD 209 | |||
SRD 210 | |||
SRD 211 | |||
... </pre> | |||
*'''Example of XEASY sequence list with mapping numbers.''' <br> | |||
<pre>... | |||
SRD 201 42 | |||
SRD 202 86 | |||
SRD 203 17 | |||
SRD 204 129 | |||
SRD 205 | |||
SRD 206 121 | |||
SRD 207 3 | |||
SRD 208 | |||
SRD 209 | |||
SRD 210 45 | |||
SRD 211 7 | |||
... | |||
</pre> | |||
<br> where columns 1 to 3 are residue name, fragment number and mapping number, respectively. The mapping number defines a residue's real position in the protein sequence. | |||
<br> | |||
-- <span class="WYSIWYG_LINK">Main.GaohuaLiu</span> - 14 Jun 2007 | -- <span class="WYSIWYG_LINK">Main.GaohuaLiu</span> - 14 Jun 2007 | ||
Latest revision as of 17:09, 10 November 2009
Sequence List
The XEASY sequence list defines the primary sequence of the biomolecule. In the initial phases of an assignment cycle, it is advantageous to use generic spin-system names such as SS for conventional spectra or SRD for reduced dimensionality spectra and GFT spectra. The sequence file will contain only the residue type and the residue number (shown below).
- Example of XEASY sequence list.
... SRD 201 SRD 202 SRD 203 SRD 204 SRD 205 SRD 206 SRD 207 SRD 208 SRD 209 SRD 210 SRD 211 ...
- Example of XEASY sequence list with mapping numbers.
... SRD 201 42 SRD 202 86 SRD 203 17 SRD 204 129 SRD 205 SRD 206 121 SRD 207 3 SRD 208 SRD 209 SRD 210 45 SRD 211 7 ...
where columns 1 to 3 are residue name, fragment number and mapping number, respectively. The mapping number defines a residue's real position in the protein sequence.
-- Main.GaohuaLiu - 14 Jun 2007