Resonance Assignment/Abacus/Protein Sequence format: Difference between revisions
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The first line | == '''1. Fasta format.''' == | ||
The first line should start with '>' symbol. | |||
Next one or more lines contain sequence in 1-letter code. | Next one or more lines contain sequence in 1-letter code. | ||
<br> | |||
<br> | |||
Example | ''Example 1.1:<br>'' | ||
<pre>> | |||
MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE | |||
KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD </pre> | |||
== <br>'''2. "Standard" format.''' == | |||
Each line contains name of one residue in 3-letter code and, optionally, the residue ID. | |||
(Only residue ID of the first residue is used to start [[FMCGUI objects#Protein_sequence|numbering of sequence positions]]. | |||
<br> | |||
GLN -3 GLY HIS MET PRO GLY ILE ILE TYR ..... | ''Example 2.1.'' (position ID is not specified): | ||
<pre>GLN | |||
GLY | |||
HIS | |||
MET | |||
PRO | |||
GLY | |||
ILE | |||
ILE | |||
TYR | |||
GLU | |||
GLY | |||
.... </pre> | |||
''Example 2.2.'' (with specified all position ID): | |||
<pre>GLN -3 | |||
GLY -2 | |||
HIS -1 | |||
MET 0 | |||
PRO 1 | |||
GLY 2 | |||
ILE 3 | |||
ILE 4 | |||
TYR 5 | |||
..... </pre> | |||
''Example 2.3.'' (with specified first position ID): | |||
<pre>GLN -3 | |||
GLY | |||
HIS | |||
MET | |||
PRO | |||
GLY | |||
ILE | |||
.....</pre> |
Latest revision as of 23:34, 5 January 2010
1. Fasta format.
The first line should start with '>' symbol.
Next one or more lines contain sequence in 1-letter code.
Example 1.1:
> MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD
2. "Standard" format.
Each line contains name of one residue in 3-letter code and, optionally, the residue ID.
(Only residue ID of the first residue is used to start numbering of sequence positions.
Example 2.1. (position ID is not specified):
GLN GLY HIS MET PRO GLY ILE ILE TYR GLU GLY ....
Example 2.2. (with specified all position ID):
GLN -3 GLY -2 HIS -1 MET 0 PRO 1 GLY 2 ILE 3 ILE 4 TYR 5 .....
Example 2.3. (with specified first position ID):
GLN -3 GLY HIS MET PRO GLY ILE .....