Resonance Assignment/Abacus/Protein Sequence format: Difference between revisions

Latest revision as of 23:34, 5 January 2010

The first line should start with '>' symbol.

Next one or more lines contain sequence in 1-letter code.

Example 1.1:

>
MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE
KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD

Each line contains name of one residue in 3-letter code and, optionally, the residue ID.

(Only residue ID of the first residue is used to start numbering of sequence positions.

Example 2.1. (position ID is not specified):

GLN 
GLY 
HIS 
MET 
PRO 
GLY 
ILE 
ILE 
TYR 
GLU 
GLY 
....

Example 2.2. (with specified all position ID):

GLN  -3
GLY  -2 
HIS  -1 
MET   0 
PRO   1 
GLY   2 
ILE   3 
ILE   4 
TYR   5 
.....

Example 2.3. (with specified first position ID):

GLN  -3
GLY  
HIS
MET
PRO
GLY
ILE
.....

@@ Line 1: / Line 1: @@
-= '''1. Fasta format.'''  =
+__TOC__
-The first line shoul start with '&gt;' symbol.
+== '''1. Fasta format.'''  ==
+The first line should start with '&gt;' symbol.
 Next one or more lines contain sequence in 1-letter code.
 <br>
 ''Example 1.1:<br>''
 <pre>&gt;
 MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE
 KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD </pre>
-= <br>'''2. "Standard" format.'''  =
-Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.
+== <br>'''2. "Standard" format.'''  ==
+Each line contains name of one residue in 3-letter code and, optionally, the residue ID.
-(only residue ID of the first residue is used to start numbering of the sequence positions).
+(Only residue ID of the first residue is used to start [[FMCGUI objects#Protein_sequence|numbering of sequence positions]].
 <br>
 ''Example 2.1.'' (position ID is not specified):
@@ Line 31: / Line 34: @@
 GLU
 GLY
 .... </pre>
 ''Example 2.2.'' (with specified all position ID):
 <pre>GLN  -3
@@ Line 42: / Line 45: @@
 ILE   4
 TYR   5
 ..... </pre>
 ''Example 2.3.'' (with specified first position ID):
 <pre>GLN  -3