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| == Loading a New Template ==
| | The topics below provide an overview of resonance assignment of 15N,13C-labeled proteins using CARA. For more information and tutorials please consult [http://www.nmr.ch CARA web site]. |
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| To start a new structure determination project in CARA you need to load a template. A template is a CARA repository without project that contains definitions for residue types, spectrum type and LUA scripts. You can either load the default template from the [http://www.cara.ethz.ch/Wiki/TemplatesPage templates page] of the official CARA web-site, or extract a template from an existing CARA repository.
| | *[[CARA Introduction|Introduction]] |
| | *[[CARA vs Xeasy|Differences from XEASY]] |
| | *[[CARA Scopes|Scopes - Displaying NMR Spectra]] |
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| For detailed instructions see: http://www.cara.ethz.ch/Wiki/ImportingTemplate
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| <br>[[Image:CARA New Template Dialogue.png]]
| | *[[Resonance Assignment/CARA/Starting a new project|Starting a new project]] |
| | *[[Resonance Assignment/CARA/Backbone assignment|Backbone resonance assignment]] |
| | *Side Chain Assignment |
| | **[[Aliphatic Side Chain Assignment with CARA|Aliphatic side-chain assignment]] |
| | **[[Aromatic Side Chain Assignment with CARA|Aromatic side-chain assignment]] |
| | **[[Amide Side Chain Assignment with CARA|Amide side-chain assignment]] |
| | *[[SSAFromFractional13CLabeledSample|Stereospecific Assignment of Leu and Val Isopropyl Groups]] |
| | *[[Creating NOESY peaklists with CARA|Creating NOESY peaklists]] |
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| CARA Template for GFT spectra [[Media:BoR54_template.cara|BoR54_template.cara]]: Latest GFT template for BoR54 project
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| Key modifications are:
| | Also see [[Resonance_Assignment/CARA/Backbone_assignment_GFT|backbone assignment with GFT spectra]] |
| *Added linker residue definitions to facilitate treatment of homodimers
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| *Added definitions of (4,3)D HNNCABCA, (4,3)D CABCA(CO)NHN and (4,3)D HABCAB(CO)NHN
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| *Added attributes for GFT spectra - used by Lua scripts
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| *LUA scripts
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| **CreateConsensusPeaklist - consensus peaklist from two loaded peak lists
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| **CreateSequentialSpinLinks
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| **ExportSeqToAutostructure - prepare sequence in Autostructure format
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| **ExportToAutoAssign - generate all files for AutoAssign input
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| **ExportToCSI - generate CSI input file
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| **GFT_aroHCCH_calc - small applet too calculate aromatic side-chain spin in (4,3)D HCCH-COSY
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| **GFT_HCCH_calc - small applet too calculate aliphatic side-chain spin in (4,3)D HCCH-COSY
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| **GFT_CABCA2CACB - calculate CA and CB from sum and difference shifts
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| **ImportCyana2xPeakList - import peaklist in CYANA 2.x format (with multiple assignments)
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| **ImportSparkyPeakList - import peaklist in Sparky format (from AutoStructure)
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| **ImportFromAutoAssign - read assignments produced by AutoAssign
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| **etc...
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| #[[CARA Introduction|Introduction]]
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| #[[Spin System Identification with CARA|Spin System Identification in 2D 15N-HSQC and 3D HNNCO]]
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| #[[Backbone Assignment with CARA|Backbone Resonance Assignment]]
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| #[[HA and HB Assignment with CARA|Assignment of HA and HB Resonances with (4,3)D GFT HABCAB(CO)NHN]]
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| #Side Chain Assignment
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| ##[[Aliphatic Side Chain Assignment with CARA|Aliphatic side-chain assignment]]
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| ##[[Aromatic Side Chain Assignment with CARA|Aromatic side-chain assignment]]
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| ##[[Amide Side Chain Assignment with CARA|Amide side-chain assignment]]
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