XEASY Sequence List: Difference between revisions

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== '''Sequence List'''  ==
== '''Sequence List'''  ==


The XEASY sequence list defines the primary sequence of the biomolecule. In the initial phases of an assignment cycle, it is advantageous to use generic spin-system names such as
The XEASY sequence list defines the primary sequence of the biomolecule. In the initial phases of an assignment cycle, it is advantageous to use generic spin-system names such as <span class="WYSIWYG_TT">SS</span> for conventional spectra or <span class="WYSIWYG_TT">SRD</span> for reduced dimensionality spectra and GFT spectra. The sequence file will contain only the residue type and the residue number (shown below).  
<span class="WYSIWYG_TT">SS</span>
for conventional spectra or
<span class="WYSIWYG_TT">SRD</span>
for reduced dimensionality spectra and GFT spectra. The sequence file will contain only the residue type and the residue number (shown below).


*'''Example of XEASY sequence list.''' <br> <pre class="TMLverbatim">
*'''Example of XEASY sequence list.''' <br>
&nbsp;...
<pre>...
&nbsp;SRD&nbsp;201
SRD 201
&nbsp;SRD&nbsp;202
SRD 202
&nbsp;SRD&nbsp;203
SRD 203
&nbsp;SRD&nbsp;204
SRD 204
&nbsp;SRD&nbsp;205
SRD 205
&nbsp;SRD&nbsp;206
SRD 206
&nbsp;SRD&nbsp;207
SRD 207
&nbsp;SRD&nbsp;208
SRD 208
&nbsp;SRD&nbsp;209
SRD 209
&nbsp;SRD&nbsp;210
SRD 210
&nbsp;SRD&nbsp;211
SRD 211
...</pre> <br>  
... </pre>  
*'''Example of XEASY sequence list with mapping number.''' <br> <pre class="TMLverbatim">
*'''Example of XEASY sequence list with mapping number.''' <br> <pre class="TMLverbatim" />
...
&nbsp;SRD&nbsp;201&nbsp;&nbsp;42
&nbsp;SRD&nbsp;202&nbsp;&nbsp;86
&nbsp;SRD&nbsp;203&nbsp;&nbsp;17
&nbsp;SRD&nbsp;204&nbsp;129
&nbsp;SRD&nbsp;205
&nbsp;SRD&nbsp;206&nbsp;121
&nbsp;SRD&nbsp;207&nbsp;&nbsp;&nbsp;3
&nbsp;SRD&nbsp;208
&nbsp;SRD&nbsp;209
&nbsp;SRD&nbsp;210&nbsp;&nbsp;45
&nbsp;SRD&nbsp;211&nbsp;&nbsp;&nbsp;7
...</pre> <br> when columns 1 to 3 are residue name, fragment number and mapping number, respectively. The mapping number defines a residue's real position in the protein sequence.


... &nbsp;SRD&nbsp;201&nbsp;&nbsp;42 &nbsp;SRD&nbsp;202&nbsp;&nbsp;86 &nbsp;SRD&nbsp;203&nbsp;&nbsp;17 &nbsp;SRD&nbsp;204&nbsp;129 &nbsp;SRD&nbsp;205 &nbsp;SRD&nbsp;206&nbsp;121 &nbsp;SRD&nbsp;207&nbsp;&nbsp;&nbsp;3 &nbsp;SRD&nbsp;208 &nbsp;SRD&nbsp;209 &nbsp;SRD&nbsp;210&nbsp;&nbsp;45 &nbsp;SRD&nbsp;211&nbsp;&nbsp;&nbsp;7


... <br> when columns 1 to 3 are residue name, fragment number and mapping number, respectively. The mapping number defines a residue's real position in the protein sequence.
<br>


-- <span class="WYSIWYG_LINK">Main.GaohuaLiu</span> - 14 Jun 2007
-- <span class="WYSIWYG_LINK">Main.GaohuaLiu</span> - 14 Jun 2007

Revision as of 17:06, 10 November 2009


Sequence List

The XEASY sequence list defines the primary sequence of the biomolecule. In the initial phases of an assignment cycle, it is advantageous to use generic spin-system names such as SS for conventional spectra or SRD for reduced dimensionality spectra and GFT spectra. The sequence file will contain only the residue type and the residue number (shown below).

  • Example of XEASY sequence list.
...  
SRD 201  
SRD 202  
SRD 203  
SRD 204  
SRD 205  
SRD 206  
SRD 207  
SRD 208  
SRD 209  
SRD 210  
SRD 211
... 
  • Example of XEASY sequence list with mapping number.

...  SRD 201  42  SRD 202  86  SRD 203  17  SRD 204 129  SRD 205  SRD 206 121  SRD 207   3  SRD 208  SRD 209  SRD 210  45  SRD 211   7

...
when columns 1 to 3 are residue name, fragment number and mapping number, respectively. The mapping number defines a residue's real position in the protein sequence.


-- Main.GaohuaLiu - 14 Jun 2007