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| <div><u><span><span><span style="font-size: 13pt">'''A1. "Fasta" format'''</span></span></span><span style="font-size: 11pt"> </span></u></div><div ><u><span style="font-size: 11pt" /></ u><span style="font-size: 11pt"> The first line should start with '& gt; '. Next one or more </span>l<span style="font-size: 11pt">ines contain sequence in 1-letter code.</span></div><div> </div><div><span><font size="2"> </font></span></div><div><font size="2">Example_A1:</font></div>< pre><span><span><span style="font-size: 13pt" >'''<div><font size="2">> </font></div><div><font size="2">MDSKEVLVHVKNLEKNKSNDAAVLEILHVL</font></div><div><font size="2">DKEFVPTE KLLRETKVGVE VNKFKKSTN</font></ div><span style="font-size: 12pt"> VEISKLVKKMISSWKDAIN </span> '''</span></ span></ span>< /pre>< div><span><span><span style="font-size: 13pt"</span></span></span> </div><div><u><span><span><span style="font-size: 13pt">'''A2. "Standard" format'''</span></span></span><span style="font-size: 11pt">. </span></u></div><div><span style="font-size: 11pt">Each line contains name of one residue in 3-letter code</span> <span style="font-size: 11pt">and optionally the residues ID . (Only residue ID of the first residue is used).</span> </div><div> </div><div><font size ="2"> Example_A2.1 ( position ID is not specified)</ font></div><div> </div ><pre><font size="2">GLN</font> | | <div><u><span><span><span style="font-size: 13pt">'''A1. "Fasta" format'''</span></span></span><span style="font-size: 11pt"> </span></u></div><div><span style="font-size: 11pt" >The first line should start with ''>". </ span></ div><div><span style="font-size: 11pt">& nbsp;Next one or more </span>l<span style="font-size: 11pt">ines contain sequence in 1-letter code.</span></div><div> </div><div><span><font size="2"> </font></span></div><div><font size="2">Example_A1:</font></div>< div><u><span><span><span style="font-size: 13pt"</span></span></span></ u></ div>< div>< u><span><span><span style="font-size: 13pt"</span></span></span> </u></div><div><u><span><span><span style="font-size: 13pt">'''A2. "Standard" format'''</span></span></span><span style="font-size: 11pt">. </span></u></div><div><span style="font-size: 11pt">Each line contains name of one residue in 3-letter code</span> <span style="font-size: 11pt">and optionally the residues ID. </span></div><div>< span style="font -size : 11pt">( Only residue ID of the first residue is used to start sequence position numbering) .</ span></div><div> </div><div><font size="2">Example_A2. 1 (position ID is not specified)</font></div><div> </div><div><font size="2"></font></div><div> </div><div> </div><div><font size="2">Example_A2.3 (with specified first position ID):</font></div><div> </div> |
| <font size="2">GLY
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| <span lang="EN-CA">GLN</span>
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| <span lang="EN-CA">GLY</span>
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| <span lang="EN-CA">HIS</span>
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| <span lang="EN-CA">MET</span>
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| <span lang="EN-CA">PRO</span>
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| <span lang="EN-CA">GLY</span>
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| <span lang="EN-CA">ILE</span>
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| <span lang="EN-CA">ILE</span>
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| <span lang="EN-CA">TYR</span>
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| <span lang="EN-CA">GLU</span>
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| <span lang="EN-CA">GLY</span>
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| <st1:place w:st="on"><span lang="EN-CA">LYS</span></st1:place>
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| <span lang="EN-CA">GLY</span>
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| <span lang="EN-CA">THR</span>
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| <span lang="EN-CA">ASN</span>
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| <span lang="EN-CA">MET</span>
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| <span lang="EN-CA">GLU</span>
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| <span lang="EN-CA" style="font-size: 12pt; font-family: 'times new roman'; mso-fareast-font-family: 'times new roman'; mso-ansi-language: en-ca; mso-fareast-language: en-us; mso-bidi-language: ar-sa">....</span></font></pre><div><font size="2">Example_A2. 2 ( with specified all position ID) :</font></div><div><font size="2"></font></div><pre><div><font size="2">GLN -3</font></div><div><font size="2">GLY -2</font></div><div> <font size="2">HIS -1</font></div><div><font size="2" >MET <span> 0</span></font> </div><div><font size="2">PRO<span> 1</span></font></div><div><font size="2">GLY <span> 2</span></font></div><div><font size="2">ILE<span> 3</span></font></div><div><font size="2">ILE<span> 4</span></font></div><div><font size="2">TYR 5</font></div><div><font size="2">.....</font></div></pre><div> </div><div> </div><div> </div><div><font size="2">Example_A2.3 (with specified first position ID):</font></div ><pre><div><font size="2">GLN -3</font></div><div><font size="2">GLY </font></div><div><font size="2">HIS </font></div><div><font size="2">MET<span> </span></font></div><div><font size="2">PRO </font></div><div><font size="2">GLY </font></div><div><font size="2">ILE </font></div><div><font size="2">ILE </font></div><div><font size="2">TYR </font></div><div><font size="2">.....</font></div><font size="2"></font></pre><div> </div> | |
Revision as of 23:35, 25 November 2009
A1. "Fasta" format
The first line should start with >".
Next one or more lines contain sequence in 1-letter code.
Example_A1:
<span style="font-size: 13pt"
<span style="font-size: 13pt"
A2. "Standard" format.
Each line contains name of one residue in 3-letter code and optionally the residues ID.
(Only residue ID of the first residue is used to start sequence position numbering).
Example_A2.1 (position ID is not specified)
Example_A2.3 (with specified first position ID):