Resonance Assignment/Abacus/Protein Sequence format: Difference between revisions
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== '''1. Fasta format.''' == | == '''1. Fasta format.''' == | ||
Revision as of 20:25, 27 November 2009
1. Fasta format.
The first line shoul start with '>' symbol.
Next one or more lines contain sequence in 1-letter code.
Example 1.1:
> MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD
2. "Standard" format.
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.
(only residue ID of the first residue is used to start numbering of the sequence positions).
Example 2.1. (position ID is not specified):
GLN GLY HIS MET PRO GLY ILE ILE TYR GLU GLY ....
Example 2.2. (with specified all position ID):
GLN -3 GLY -2 HIS -1 MET 0 PRO 1 GLY 2 ILE 3 ILE 4 TYR 5 .....
Example 2.3. (with specified first position ID):
GLN -3 GLY HIS MET PRO GLY ILE .....