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== Safety Protocols  ==
== Safety Protocols  ==
Everyone working in the NMR laboratory in ‘Statler Commissary’ is expected to act professionally and environmentally responsible. Our laboratory is committed to minimize the risk of personal and environmental hazards involved in working with high-field magnets and handling biological fluids. Thus, the protocols herein are established. These protocols are specifically tailored to our laboratory and subject to change if better procedures are identified in minimizing such risks.


=== Contact information  ===
=== Contact information  ===


*'''Dr. Khalid Ahsan'''Chemistry Department Safety Officer
*'''Dr. Khalid Ahsan'''Chemistry Department Safety Officer


ahsan@buffalo.edu
ahsan@buffalo.edu  


716-645-4115
716-645-4115  


*'''Dr. Leonard Borzynski'''
*'''Dr. Leonard Borzynski'''


Manager, Biosafety Division, Environment, Health & Safety (EH&S)
Manager, Biosafety Division, Environment, Health & Safety (EH&S)  


lenb@buffalo.edu
lenb@buffalo.edu  


716-829-3301; 716-829-2401 (sharps injury reporting)
716-829-3301; 716-829-2401 (sharps injury reporting)  


*'''University Police'''
*'''University Police'''


716-645-2222
716-645-2222  


Mr. Erwin Garcia
Mr. Erwin Garcia  


PhD student
PhD student  


egarcia3@buffalo.edu
egarcia3@buffalo.edu  


716-908-8567
716-908-8567  


*'''Dr. Dinesh Sukumaran'''
*'''Dr. Dinesh Sukumaran'''


Director, NMR Center<br>
Director, NMR Center<br>  


dks@buffalo.edu
dks@buffalo.edu  


716-725-1107
716-725-1107  


*'''Dr. Thomas Szyperski'''
*'''Dr. Thomas Szyperski'''


Principal Investigator
Principal Investigator  


szypersk@buffalo.edu
szypersk@buffalo.edu  


716-472-7075
716-472-7075  


*'''Szyperski Lab'''
*'''Szyperski Lab'''


716-645-4302, 716-645-4303, 716-645-4304, 716-645-4312
716-645-4302, 716-645-4303, 716-645-4304, 716-645-4312  


*'''University at Buffalo Health Services'''
*'''University at Buffalo Health Services'''


716-829-3316
716-829-3316  


*'''Millard Fillmore Suburban Hospital'''
*'''Millard Fillmore Suburban Hospital'''


1540 Maple Road
1540 Maple Road  


Williamsville, NY 14221
Williamsville, NY 14221  


716- 568-3600
716- 568-3600  


*'''STERICYCLE'''
*'''STERICYCLE'''


http://www.stericycle.com/medical-waste-disposal/customer-pickup-request.html
http://www.stericycle.com/medical-waste-disposal/customer-pickup-request.html  


1-866-783-7422
1-866-783-7422  


<br>


=== NMR Safety Rules  ===
=== NMR Safety Rules  ===
Line 77: Line 81:
==== Cryogenic liquids  ====
==== Cryogenic liquids  ====


 
#No person is allowed to use cryogenic liquids without training and permissio  
#No person is allowed to use cryogenic liquids without training and permissio
#Dr. Sukumaran should be notified first before any attempt to use cryogenic liquids  
#Dr. Sukumaran should be notified first before any attempt to use cryogenic liquids
#Protective glasses and thermal gloves should be used when working with cryogenic&nbsp;liquids  
#Protective glasses and thermal gloves should be used when working with cryogenic&nbsp;liquids
#In the event of a magnet quench, all occupants must exit the NMR lab immediately  
#In the event of a magnet quench, all occupants must exit the NMR lab immediately
#Any accident of exposure to cryogenic liquids must be reported to Dr. Sukumaran&nbsp;and Dr. Khalid Ahsan.
#Any accident of exposure to cryogenic liquids must be reported to Dr. Sukumaran&nbsp;and Dr. Khalid Ahsan.


<br>


==== Magnetic materials  ====
==== Magnetic materials  ====


 
#Persons with metallic implants (e.g. cardiac pacemakers, orthopedic pins, plates,&nbsp;arterial clips, etc.) must keep at least 10 feet distance from the magnets  
#Persons with metallic implants (e.g. cardiac pacemakers, orthopedic pins, plates,&nbsp;arterial clips, etc.) must keep at least 10 feet distance from the magnets
#Metal and magnetic objects (e.g spatulas, carts, keys, ATM cards, wristwatches,&nbsp;laptops, magnetic tapes, disks, etc.) must be left in the wet lab room or on the table&nbsp;outside the NMR room
#Metal and magnetic objects (e.g spatulas, carts, keys, ATM cards, wristwatches,&nbsp;laptops, magnetic tapes, disks, etc.) must be left in the wet lab room or on the table&nbsp;outside the NMR room


<br>


==== Physical contact  ====
==== Physical contact  ====


 
#Don’t lean on the magnet  
#Don’t lean on the magnet
#Use the stairs provided for the spectrometers when loading the sample
#Use the stairs provided for the spectrometers when loading the sample


<br>


==== Injury reporting  ====
==== Injury reporting  ====
Line 105: Line 109:
=== Biosafety  ===
=== Biosafety  ===


==== Safety training ====
==== Safety training ====


===== Schedule for a discussion on the following should be made with Mr. Garcia (et. al.) =====
===== Schedule for a discussion on the following should be made with Mr. Garcia (et. al.) =====


 
#Exposure Control Plan  
#Exposure Control Plan
#Metabonomics lab set up in Statler  
#Metabonomics lab set up in Statler
#[http://www.osha.gov/pls/oshaweb/owadisp.show_document?p_table=STANDARDS&p_id=10051 Occupational Safety and Health Administration standards&nbsp;Regulations (Standards - 29 CFR) Bloodborne Pathogens]  
#[http://www.osha.gov/pls/oshaweb/owadisp.show_document?p_table=STANDARDS&p_id=10051 Occupational Safety and Health Administration standards&nbsp;Regulations (Standards - 29 CFR) Bloodborne Pathogens]
#Questions regarding other aspects of biosafety can be directed to Mr.&nbsp;Leonard Borzynski of EH&amp;S.
#Questions regarding other aspects of biosafety can be directed to Mr.&nbsp;Leonard Borzynski of EH&amp;S.


<br>


==== Training records  ====
==== Training records  ====


Write a paragraph on the WIKI regarding the date, location, resource person and bullet&nbsp;points of biosafety topics discussed


Write a paragraph on the WIKI regarding the date, location, resource person and bullet&nbsp;points of biosafety topics discussed
<br>
 


==== Vaccination  ====
==== Vaccination  ====


There are three shots that need to be legally administered to people who are front liners&nbsp;(have direct physical contact with blood and blood products):


There are three shots that need to be legally administered to people who are front liners&nbsp;(have direct physical contact with blood and blood products):
<br>
 


#Undergrad/Graduate students:&nbsp;Call University at Buffalo Health Services to schedule an appointment.
#Undergrad/Graduate students:&nbsp;Call University at Buffalo Health Services to schedule an appointment.  
#Post-docs:&nbsp;Make sure that you have an active health insurance. Search online for health&nbsp;providers that are affiliated with your current health insurance and schedule an&nbsp;appointment for vaccination. If you have a family doctor, he is also allowed to&nbsp;administer the shots, if he agrees.
#Post-docs:&nbsp;Make sure that you have an active health insurance. Search online for health&nbsp;providers that are affiliated with your current health insurance and schedule an&nbsp;appointment for vaccination. If you have a family doctor, he is also allowed to&nbsp;administer the shots, if he agrees.


 
<br>


==== Universal safety precautions and lab safety policies  ====
==== Universal safety precautions and lab safety policies  ====


 
#Prepare 10% (v/v) bleach-water solution before handling serum samples.&nbsp;Keep the solution only for a week. Fill out the form that is posted beside&nbsp;the metabonomics hood for bleach solution preparation indicating the&nbsp;date and name of person who prepared it  
 
#Wash hands with hand soap and water before and after sample&nbsp;preparation  
#Prepare 10% (v/v) bleach-water solution before handling serum samples.&nbsp;Keep the solution only for a week. Fill out the form that is posted beside&nbsp;the metabonomics hood for bleach solution preparation indicating the&nbsp;date and name of person who prepared it
#Wear double purple nitrile gloves whenever you are working with blood&nbsp;and other potentially infectious materials  
#Wash hands with hand soap and water before and after sample&nbsp;preparation
#Wear full body lab coats at the time  
#Wear double purple nitrile gloves whenever you are working with blood&nbsp;and other potentially infectious materials
#Wear safety glasses  
#Wear full body lab coats at the time
#Dispose used pipet tips, Eppendorf tubes and gloves that came in contact&nbsp;with serum and serum products in their designated biohazardous waste&nbsp;container. Contact STERICYCLE to schedule for pick up if these&nbsp;containers get filled. Note that the schedules should be made at least 2&nbsp;days prior to pick up dates.  
#Wear safety glasses
#Disinfect contaminated safety glasses, lab coats and clothing that were&nbsp;contaminated with serum and serum products by soaking them in a&nbsp;freshly prepared 10% (v/v) bleach-water solution  
#Dispose used pipet tips, Eppendorf tubes and gloves that came in contact&nbsp;with serum and serum products in their designated biohazardous waste&nbsp;container. Contact STERICYCLE to schedule for pick up if these&nbsp;containers get filled. Note that the schedules should be made at least 2&nbsp;days prior to pick up dates.
#Eating and drinking is strictly prohibited inside the NMR lab  
#Disinfect contaminated safety glasses, lab coats and clothing that were&nbsp;contaminated with serum and serum products by soaking them in a&nbsp;freshly prepared 10% (v/v) bleach-water solution
#In the event of blood serum spill, cover the spill with freshly prepared&nbsp;bleach solution and let it stand for at least an hour before wiping it off&nbsp;with paper towels. Redisinfect the surface with freshly prepared bleach&nbsp;solution. Throw the used paper towels in the biohardous waste container.  
#Eating and drinking is strictly prohibited inside the NMR lab
#For NMR tube breakage, recover as much sample as possible from the&nbsp;tube, disinfect the broken tube by soaking it in freshly prepared bleach&nbsp;solution and disinfect the surface. Throw the disinfected glass fragments&nbsp;in the broken glass container  
#In the event of blood serum spill, cover the spill with freshly prepared&nbsp;bleach solution and let it stand for at least an hour before wiping it off&nbsp;with paper towels. Redisinfect the surface with freshly prepared bleach&nbsp;solution. Throw the used paper towels in the biohardous waste container.
#In the event that the serum sample was broken inside the probe,&nbsp;immediately inform Dr. Sukumaran. Isopropyl alcohol must be used as a&nbsp;cleaner and disinfectant for the probe. Don’ t use bleach. Probe cleaning&nbsp;should only be performed with Dr. Sukumaran. If the probe/spectrometer&nbsp;needs fixing, inform the person who will fix the problem the potentially&nbsp;hazardous nature of the sample before he starts to work  
#For NMR tube breakage, recover as much sample as possible from the&nbsp;tube, disinfect the broken tube by soaking it in freshly prepared bleach&nbsp;solution and disinfect the surface. Throw the disinfected glass fragments&nbsp;in the broken glass container
#During data collection, post notes announcing that data acquisition for a&nbsp;potentially hazardous sample is on going  
#In the event that the serum sample was broken inside the probe,&nbsp;immediately inform Dr. Sukumaran. Isopropyl alcohol must be used as a&nbsp;cleaner and disinfectant for the probe. Don’ t use bleach. Probe cleaning&nbsp;should only be performed with Dr. Sukumaran. If the probe/spectrometer&nbsp;needs fixing, inform the person who will fix the problem the potentially&nbsp;hazardous nature of the sample before he starts to work
#Wipe the NMR tube with Kimwipes before loading the sample to&nbsp;minimize transfer of dirt to the probe  
#During data collection, post notes announcing that data acquisition for a&nbsp;potentially hazardous sample is on going
#If you generate garbage (e.g. used paper towels, Kimwipes, parafilms, or&nbsp;any clutter in general), throw them in regular waste bin  
#Wipe the NMR tube with Kimwipes before loading the sample to&nbsp;minimize transfer of dirt to the probe
#If you generate garbage (e.g. used paper towels, Kimwipes, parafilms, or&nbsp;any clutter in general), throw them in regular waste bin
#Clean your working area before leaving the lab
#Clean your working area before leaving the lab


 
<br>


==== Injury logs and reporting  ====
==== Injury logs and reporting  ====


 
#In case of fire or magnet quench, call the University police, Dr. Sukumaran and Dr.&nbsp;Szyperski.  
#In case of fire or magnet quench, call the University police, Dr. Sukumaran and Dr.&nbsp;Szyperski.
#If you cut or puncture yourself while handling potentially biohazardous biofluids,&nbsp;wash the ezposed area with soap and water and seek medical attention from Milliard&nbsp;Filmore Suburban Hospital or from Health Services as soon as possible.  
#If you cut or puncture yourself while handling potentially biohazardous biofluids,&nbsp;wash the ezposed area with soap and water and seek medical attention from Milliard&nbsp;Filmore Suburban Hospital or from Health Services as soon as possible.
#Report the incident to Dr. Szyperski, Dr. Ashan and Dr. Sukumaran  
#Report the incident to Dr. Szyperski, Dr. Ashan and Dr. Sukumaran
#You should also contact EH&amp;S (sharps injury reporting)  
#You should also contact EH&amp;S (sharps injury reporting)
#Fill out an accident report form&nbsp;(http://hr.buffalo.edu/files/phatfile/Workers_Comp.pdf) and follow the procedures&nbsp;therein  
#Fill out an accident report form&nbsp;(http://hr.buffalo.edu/files/phatfile/Workers_Comp.pdf) and follow the procedures&nbsp;therein
#Record the incident in ‘Sharp Injury Log book’
#Record the incident in ‘Sharp Injury Log book’


=== Additional documents ===
=== Additional documents ===


==== Chemical hygiene plan ====
==== Chemical hygiene plan ====


==== Exposure control plan<span style="font-size: 15px;" /> ====
==== Exposure control plan&lt;span style="font-size: 15px;" /&gt; ====


== Sample Storage and Preparation ==
== Sample Storage and Preparation ==

Revision as of 17:13, 25 January 2012

 

NMR

Safety Protocols

Everyone working in the NMR laboratory in ‘Statler Commissary’ is expected to act professionally and environmentally responsible. Our laboratory is committed to minimize the risk of personal and environmental hazards involved in working with high-field magnets and handling biological fluids. Thus, the protocols herein are established. These protocols are specifically tailored to our laboratory and subject to change if better procedures are identified in minimizing such risks.


Contact information

  • Dr. Khalid AhsanChemistry Department Safety Officer

ahsan@buffalo.edu

716-645-4115

  • Dr. Leonard Borzynski

Manager, Biosafety Division, Environment, Health & Safety (EH&S)

lenb@buffalo.edu

716-829-3301; 716-829-2401 (sharps injury reporting)

  • University Police

716-645-2222

Mr. Erwin Garcia

PhD student

egarcia3@buffalo.edu

716-908-8567

  • Dr. Dinesh Sukumaran

Director, NMR Center

dks@buffalo.edu

716-725-1107

  • Dr. Thomas Szyperski

Principal Investigator

szypersk@buffalo.edu

716-472-7075

  • Szyperski Lab

716-645-4302, 716-645-4303, 716-645-4304, 716-645-4312

  • University at Buffalo Health Services

716-829-3316

  • Millard Fillmore Suburban Hospital

1540 Maple Road

Williamsville, NY 14221

716- 568-3600

  • STERICYCLE

http://www.stericycle.com/medical-waste-disposal/customer-pickup-request.html

1-866-783-7422


NMR Safety Rules

Cryogenic liquids

  1. No person is allowed to use cryogenic liquids without training and permissio
  2. Dr. Sukumaran should be notified first before any attempt to use cryogenic liquids
  3. Protective glasses and thermal gloves should be used when working with cryogenic liquids
  4. In the event of a magnet quench, all occupants must exit the NMR lab immediately
  5. Any accident of exposure to cryogenic liquids must be reported to Dr. Sukumaran and Dr. Khalid Ahsan.


Magnetic materials

  1. Persons with metallic implants (e.g. cardiac pacemakers, orthopedic pins, plates, arterial clips, etc.) must keep at least 10 feet distance from the magnets
  2. Metal and magnetic objects (e.g spatulas, carts, keys, ATM cards, wristwatches, laptops, magnetic tapes, disks, etc.) must be left in the wet lab room or on the table outside the NMR room


Physical contact

  1. Don’t lean on the magnet
  2. Use the stairs provided for the spectrometers when loading the sample


Injury reporting

  1. Report any injury to Dr. Sukumaran and Dr. Ashan

Biosafety

Safety training

Schedule for a discussion on the following should be made with Mr. Garcia (et. al.)
  1. Exposure Control Plan
  2. Metabonomics lab set up in Statler
  3. Occupational Safety and Health Administration standards Regulations (Standards - 29 CFR) Bloodborne Pathogens
  4. Questions regarding other aspects of biosafety can be directed to Mr. Leonard Borzynski of EH&S.


Training records

Write a paragraph on the WIKI regarding the date, location, resource person and bullet points of biosafety topics discussed


Vaccination

There are three shots that need to be legally administered to people who are front liners (have direct physical contact with blood and blood products):


  1. Undergrad/Graduate students: Call University at Buffalo Health Services to schedule an appointment.
  2. Post-docs: Make sure that you have an active health insurance. Search online for health providers that are affiliated with your current health insurance and schedule an appointment for vaccination. If you have a family doctor, he is also allowed to administer the shots, if he agrees.


Universal safety precautions and lab safety policies

  1. Prepare 10% (v/v) bleach-water solution before handling serum samples. Keep the solution only for a week. Fill out the form that is posted beside the metabonomics hood for bleach solution preparation indicating the date and name of person who prepared it
  2. Wash hands with hand soap and water before and after sample preparation
  3. Wear double purple nitrile gloves whenever you are working with blood and other potentially infectious materials
  4. Wear full body lab coats at the time
  5. Wear safety glasses
  6. Dispose used pipet tips, Eppendorf tubes and gloves that came in contact with serum and serum products in their designated biohazardous waste container. Contact STERICYCLE to schedule for pick up if these containers get filled. Note that the schedules should be made at least 2 days prior to pick up dates.
  7. Disinfect contaminated safety glasses, lab coats and clothing that were contaminated with serum and serum products by soaking them in a freshly prepared 10% (v/v) bleach-water solution
  8. Eating and drinking is strictly prohibited inside the NMR lab
  9. In the event of blood serum spill, cover the spill with freshly prepared bleach solution and let it stand for at least an hour before wiping it off with paper towels. Redisinfect the surface with freshly prepared bleach solution. Throw the used paper towels in the biohardous waste container.
  10. For NMR tube breakage, recover as much sample as possible from the tube, disinfect the broken tube by soaking it in freshly prepared bleach solution and disinfect the surface. Throw the disinfected glass fragments in the broken glass container
  11. In the event that the serum sample was broken inside the probe, immediately inform Dr. Sukumaran. Isopropyl alcohol must be used as a cleaner and disinfectant for the probe. Don’ t use bleach. Probe cleaning should only be performed with Dr. Sukumaran. If the probe/spectrometer needs fixing, inform the person who will fix the problem the potentially hazardous nature of the sample before he starts to work
  12. During data collection, post notes announcing that data acquisition for a potentially hazardous sample is on going
  13. Wipe the NMR tube with Kimwipes before loading the sample to minimize transfer of dirt to the probe
  14. If you generate garbage (e.g. used paper towels, Kimwipes, parafilms, or any clutter in general), throw them in regular waste bin
  15. Clean your working area before leaving the lab


Injury logs and reporting

  1. In case of fire or magnet quench, call the University police, Dr. Sukumaran and Dr. Szyperski.
  2. If you cut or puncture yourself while handling potentially biohazardous biofluids, wash the ezposed area with soap and water and seek medical attention from Milliard Filmore Suburban Hospital or from Health Services as soon as possible.
  3. Report the incident to Dr. Szyperski, Dr. Ashan and Dr. Sukumaran
  4. You should also contact EH&S (sharps injury reporting)
  5. Fill out an accident report form (http://hr.buffalo.edu/files/phatfile/Workers_Comp.pdf) and follow the procedures therein
  6. Record the incident in ‘Sharp Injury Log book’

Additional documents

Chemical hygiene plan

Exposure control plan<span style="font-size: 15px;" />

Sample Storage and Preparation

Serum

Urine

Others:Non-biofluids

Pipetting

Labeling of NMR specimens

Data Acquisition

Profiling of serum

Profiling of urine

Profiling of other specimens:Non-biofluids

For Resonance Assignment

Spiking of Metabolites

Data Archiving

Data Processing

Phase Correction

1D PC

2D PC

Baseline Correction

1D BC

2D BC

Peak Alignment: Recursive Segment-wise

Spectral Quality Assessment (FOM)

Operator Certification?

Targeted Profiling--FOM?

Resonance Assignment

Development of Metabolic Models?

Statistics