Loading New Template in CARA: Difference between revisions
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=== Loading a New Template === | === Loading a New Template === | ||
To start a new structure determination project in CARA you need to load a template. | To start a new structure determination project in CARA you need to load a template. | ||
For details see here: [http://www.cara.ethz.ch/Wiki/ImportingTemplate http://www.cara.ethz.ch/Wiki/ImportingTemplate] | For details see here: [http://www.cara.ethz.ch/Wiki/ImportingTemplate http://www.cara.ethz.ch/Wiki/ImportingTemplate] | ||
==== Default Template ==== | ==== Default Template ==== | ||
For conventional NMR spectroscopy you can use the latest default template from the CARA web-site [http://www.cara.ethz.ch/Wiki/TemplatesPage http://www.cara.ethz.ch/Wiki/TemplatesPage] | For conventional NMR spectroscopy you can use the latest default template from the CARA web-site [http://www.cara.ethz.ch/Wiki/TemplatesPage http://www.cara.ethz.ch/Wiki/TemplatesPage] | ||
The template can be opened by clicking File -> Open | The template can be opened by clicking File -> Open | ||
<br>file_open.png | <br>file_open.png | ||
==== GFT Template ==== | ==== GFT Template ==== | ||
*[[%PUBURLPATH%/%WEB%/CARA/BoR54_template.cara][BoR54_template.cara]]: Latest GFT template for BoR54 project | *[[%PUBURLPATH%/%WEB%/CARA/BoR54_template.cara][BoR54_template.cara]]: Latest GFT template for BoR54 project | ||
*Key modifications are: | *Key modifications are: | ||
*Residue type definitions | *Residue type definitions | ||
**Added linker residue definitions to facilitate treatment of homodimers | **Added linker residue definitions to facilitate treatment of homodimers | ||
*Spectrum type definitions | *Spectrum type definitions | ||
**Added definitions of (4,3)D HNNCABCA, (4,3)D CABCA(CO)NHN and (4,3)D HABCAB(CO)NHN | **Added definitions of (4,3)D HNNCABCA, (4,3)D CABCA(CO)NHN and (4,3)D HABCAB(CO)NHN | ||
*Spectrum attributes | *Spectrum attributes | ||
**Added attributes for GFT spectra - used by Lua scripts | **Added attributes for GFT spectra - used by Lua scripts | ||
*Lua scripts | *Lua scripts | ||
**CreateConsensusPeaklist - consensus peaklist from two loaded peak lists | **CreateConsensusPeaklist - consensus peaklist from two loaded peak lists | ||
**CreateSequentialSpinLinks | **CreateSequentialSpinLinks | ||
**ExportSeqToAutostructure - prepare sequence in Autostructure format | **ExportSeqToAutostructure - prepare sequence in Autostructure format | ||
**ExportToMain.AutoAssign - generate all files for AutoAssign input | **ExportToMain.AutoAssign - generate all files for AutoAssign input | ||
**ExportToMain.CSI - generate CSI input file | **ExportToMain.CSI - generate CSI input file | ||
**GFT_aroHCCH_calc - small applet too calculate aromatic side-chain spin in (4,3)D HCCH-COSY | **GFT_aroHCCH_calc - small applet too calculate aromatic side-chain spin in (4,3)D HCCH-COSY | ||
**GFT_HCCH_calc - small applet too calculate aliphatic side-chain spin in (4,3)D HCCH-COSY | **GFT_HCCH_calc - small applet too calculate aliphatic side-chain spin in (4,3)D HCCH-COSY | ||
**GFT_CABCA2CACB - calculate CA and CB from sum and difference shifts | **GFT_CABCA2CACB - calculate CA and CB from sum and difference shifts | ||
**ImportCyana2xPeakList - import peaklist in CYANA 2.x format (with multiple assignments) | **ImportCyana2xPeakList - import peaklist in CYANA 2.x format (with multiple assignments) | ||
**ImportSparkyPeakList - import peaklist in Sparky format (from AutoStructure) | **ImportSparkyPeakList - import peaklist in Sparky format (from AutoStructure) | ||
**ImportFromMain.AutoAssign - read assignments produced by AutoAssign | **ImportFromMain.AutoAssign - read assignments produced by AutoAssign | ||
**and more... (I'll expand the list if I get time - AlexEletski) | **and more... (I'll expand the list if I get time - AlexEletski) | ||
Template from a Previous Repository | ==== Template from a Previous Repository ==== | ||
Alternatively, you can click File -> New from template... to open an existing template or repository as a template. This would discard any projects existing in the repository. | Alternatively, you can click File -> New from template... to open an existing template or repository as a template. This would discard any projects existing in the repository. | ||
-- Main.AlexEletski - 07 Mar 2007 | -- Main.AlexEletski - 07 Mar 2007 | ||
Revision as of 19:20, 6 November 2009
Loading a New Template
To start a new structure determination project in CARA you need to load a template.
For details see here: http://www.cara.ethz.ch/Wiki/ImportingTemplate
Default Template
For conventional NMR spectroscopy you can use the latest default template from the CARA web-site http://www.cara.ethz.ch/Wiki/TemplatesPage
The template can be opened by clicking File -> Open
file_open.png
GFT Template
- [[%PUBURLPATH%/%WEB%/CARA/BoR54_template.cara][BoR54_template.cara]]: Latest GFT template for BoR54 project
- Key modifications are:
- Residue type definitions
- Added linker residue definitions to facilitate treatment of homodimers
- Spectrum type definitions
- Added definitions of (4,3)D HNNCABCA, (4,3)D CABCA(CO)NHN and (4,3)D HABCAB(CO)NHN
- Spectrum attributes
- Added attributes for GFT spectra - used by Lua scripts
- Lua scripts
- CreateConsensusPeaklist - consensus peaklist from two loaded peak lists
- CreateSequentialSpinLinks
- ExportSeqToAutostructure - prepare sequence in Autostructure format
- ExportToMain.AutoAssign - generate all files for AutoAssign input
- ExportToMain.CSI - generate CSI input file
- GFT_aroHCCH_calc - small applet too calculate aromatic side-chain spin in (4,3)D HCCH-COSY
- GFT_HCCH_calc - small applet too calculate aliphatic side-chain spin in (4,3)D HCCH-COSY
- GFT_CABCA2CACB - calculate CA and CB from sum and difference shifts
- ImportCyana2xPeakList - import peaklist in CYANA 2.x format (with multiple assignments)
- ImportSparkyPeakList - import peaklist in Sparky format (from AutoStructure)
- ImportFromMain.AutoAssign - read assignments produced by AutoAssign
- and more... (I'll expand the list if I get time - AlexEletski)
Template from a Previous Repository
Alternatively, you can click File -> New from template... to open an existing template or repository as a template. This would discard any projects existing in the repository.
-- Main.AlexEletski - 07 Mar 2007