Bioinformatics with protein sequence: Difference between revisions
m (Created page with '== SPINE database software == SPINE (Structural Proteomics in the NorthEast) is the NESG's project coordination database. <br> The SPINE data model closely mirrors the curren…') |
No edit summary |
||
| Line 1: | Line 1: | ||
== SPINE database software == | == SPINE database software == | ||
SPINE (Structural Proteomics in the NorthEast) is the NESG's project coordination database. <br> The SPINE data model closely mirrors the current pepcDB data model with database tables responsible for tracking target, construct, expression, purification, X-Ray and NMR structure data. Spine generates weekly targetDB and pepcDB data depositions which are retrieved by the PSI-KB, generates meta-data required for archiving NESG constructs at the PSI-MR, and provides key NESG protein production pipeline, sample distribution, and structure determination statistics. | |||
<br> SPINE's Protein Sample Tube (PST) records provide detais about NESG protein samples and link into the samples target, construct, expression, purification, and structure screening SPINE records. | |||
<br> | |||
SPINE provides Bioinformatics information based on the protein sequences, including: | |||
# link to [[http://us.expasy.org/sprot/ | Swiss-Prot/Uniprot page]] | |||
#Competition report | |||
#ZincFinder | |||
SPINE provides Bioinformatics information based on the protein sequences, including: | #pXs to predict protein crystallography success | ||
# Competition report | #DisMeta - disorder and secondary structure prediction | ||
# ZincFinder | |||
# pXs to predict protein crystallography success | |||
# DisMeta - disorder and secondary structure prediction | |||
Revision as of 21:41, 12 November 2009
SPINE database software
SPINE (Structural Proteomics in the NorthEast) is the NESG's project coordination database.
The SPINE data model closely mirrors the current pepcDB data model with database tables responsible for tracking target, construct, expression, purification, X-Ray and NMR structure data. Spine generates weekly targetDB and pepcDB data depositions which are retrieved by the PSI-KB, generates meta-data required for archiving NESG constructs at the PSI-MR, and provides key NESG protein production pipeline, sample distribution, and structure determination statistics.
SPINE's Protein Sample Tube (PST) records provide detais about NESG protein samples and link into the samples target, construct, expression, purification, and structure screening SPINE records.
SPINE provides Bioinformatics information based on the protein sequences, including:
- link to [| Swiss-Prot/Uniprot page]
- Competition report
- ZincFinder
- pXs to predict protein crystallography success
- DisMeta - disorder and secondary structure prediction