Resonance Assignment/Abacus/Protein Sequence format: Difference between revisions
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'''1. Fasta format.''' | = '''1. Fasta format.''' = | ||
The first line shoul start with '>' symbol. | The first line shoul start with '>' symbol. | ||
| Line 7: | Line 7: | ||
<br> | <br> | ||
''Example 1:<br>'' | ''Example 1.1:<br>'' | ||
<pre>> | <pre>> | ||
MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE | MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE | ||
KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD </pre> | KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD </pre> | ||
<br>'''2. "Standard" format.''' | = <br>'''2. "Standard" format.''' = | ||
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID. | Each line contains name of one residue in 3-lettr code and, optionally, the residue ID. | ||
| Line 19: | Line 19: | ||
<br> | <br> | ||
''Example 2.1'' (position ID is not specified): | ''Example 2.1.'' (position ID is not specified): | ||
<pre>GLN | <pre>GLN | ||
GLY | GLY | ||
| Line 32: | Line 32: | ||
GLY | GLY | ||
.... </pre> | .... </pre> | ||
''Example 2.2'' (with specified all position ID): | ''Example 2.2.'' (with specified all position ID): | ||
<pre>GLN -3 | <pre>GLN -3 | ||
GLY -2 | GLY -2 | ||
| Line 43: | Line 43: | ||
TYR 5 | TYR 5 | ||
..... </pre> | ..... </pre> | ||
''Example 2.3'' (with specified first position ID): | ''Example 2.3.'' (with specified first position ID): | ||
<pre>GLN -3 | <pre>GLN -3 | ||
GLY | GLY | ||
Revision as of 23:31, 26 November 2009
1. Fasta format.
The first line shoul start with '>' symbol.
Next one or more lines contain sequence in 1-letter code.
Example 1.1:
> MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD
2. "Standard" format.
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.
(only residue ID of the first residue is used to start numbering of the sequence positions).
Example 2.1. (position ID is not specified):
GLN GLY HIS MET PRO GLY ILE ILE TYR GLU GLY ....
Example 2.2. (with specified all position ID):
GLN -3 GLY -2 HIS -1 MET 0 PRO 1 GLY 2 ILE 3 ILE 4 TYR 5 .....
Example 2.3. (with specified first position ID):
GLN -3 GLY HIS MET PRO GLY ILE .....