Resonance Assignment/Abacus/Protein Sequence format: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
= '''1. Fasta format.''' = | == '''1. Fasta format.''' == | ||
The first line shoul start with '>' symbol. | The first line shoul start with '>' symbol. | ||
| Line 11: | Line 11: | ||
MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE | MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE | ||
KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD </pre> | KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD </pre> | ||
= <br>'''2. "Standard" format.''' = | == <br>'''2. "Standard" format.''' == | ||
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID. | Each line contains name of one residue in 3-lettr code and, optionally, the residue ID. | ||
Revision as of 20:19, 27 November 2009
1. Fasta format.
The first line shoul start with '>' symbol.
Next one or more lines contain sequence in 1-letter code.
Example 1.1:
> MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD
2. "Standard" format.
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.
(only residue ID of the first residue is used to start numbering of the sequence positions).
Example 2.1. (position ID is not specified):
GLN GLY HIS MET PRO GLY ILE ILE TYR GLU GLY ....
Example 2.2. (with specified all position ID):
GLN -3 GLY -2 HIS -1 MET 0 PRO 1 GLY 2 ILE 3 ILE 4 TYR 5 .....
Example 2.3. (with specified first position ID):
GLN -3 GLY HIS MET PRO GLY ILE .....