Resonance Assignment/Abacus/Protein Sequence format: Difference between revisions

Revision as of 23:05, 30 November 2009

The first line shoul start with '>' symbol.

Next one or more lines contain sequence in 1-letter code.

Example 1.1:

>
MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE
KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD

Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.

(Only residue ID of the first residue of the sequence is used to start numbering of the sequence positions).

Example 2.1. (position ID is not specified):

GLN 
GLY 
HIS 
MET 
PRO 
GLY 
ILE 
ILE 
TYR 
GLU 
GLY 
....

Example 2.2. (with specified all position ID):

GLN  -3
GLY  -2 
HIS  -1 
MET   0 
PRO   1 
GLY   2 
ILE   3 
ILE   4 
TYR   5 
.....

Example 2.3. (with specified first position ID):

GLN  -3
GLY  
HIS
MET
PRO
GLY
ILE
.....

@@ Line 17: / Line 17: @@
 Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.
-(Only residue ID of the first residue of the [[FMCGUI_objects#Protein_Sequence|sequence]] is used to start numbering of the sequence positions).
+(Only residue ID of the first residue of the [[FMCGUI objects#Protein_sequence|sequence]] is used to start numbering of the sequence positions).
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