Resonance Assignment/Abacus/Protein Sequence format: Difference between revisions

Revision as of 23:08, 30 November 2009

The first line shoul start with '>' symbol.

Next one or more lines contain sequence in 1-letter code.

Example 1.1:

>
MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE
KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD

Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.

(Only residue ID of the first residue is used to start numbering of sequence positions.

Example 2.1. (position ID is not specified):

GLN 
GLY 
HIS 
MET 
PRO 
GLY 
ILE 
ILE 
TYR 
GLU 
GLY 
....

Example 2.2. (with specified all position ID):

GLN  -3
GLY  -2 
HIS  -1 
MET   0 
PRO   1 
GLY   2 
ILE   3 
ILE   4 
TYR   5 
.....

Example 2.3. (with specified first position ID):

GLN  -3
GLY  
HIS
MET
PRO
GLY
ILE
.....

@@ Line 17: / Line 17: @@
 Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.
-(Only residue ID of the first residue of the [[FMCGUI objects#Protein_sequence|sequence]] is used to start numbering of the sequence positions).
+(Only residue ID of the first residue is used to start [[FMCGUI objects#Protein_sequence|numbering of sequence positions]].
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