Resonance Assignment/Abacus/Protein Sequence format: Difference between revisions
Jump to navigation
Jump to search
m (moved Protein Sequence to Protein Sequence format) |
No edit summary |
||
| Line 3: | Line 3: | ||
== '''1. Fasta format.''' == | == '''1. Fasta format.''' == | ||
The first line | The first line should start with '>' symbol. | ||
Next one or more lines contain sequence in 1-letter code. | Next one or more lines contain sequence in 1-letter code. | ||
<br> | <br> | ||
''Example 1.1:<br>'' | ''Example 1.1:<br>'' | ||
<pre>> | <pre>> | ||
MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE | MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE | ||
KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD </pre> | KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD </pre> | ||
== <br>'''2. "Standard" format.''' == | == <br>'''2. "Standard" format.''' == | ||
Revision as of 21:14, 15 December 2009
1. Fasta format.
The first line should start with '>' symbol.
Next one or more lines contain sequence in 1-letter code.
Example 1.1:
> MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD
2. "Standard" format.
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.
(Only residue ID of the first residue is used to start numbering of sequence positions.
Example 2.1. (position ID is not specified):
GLN GLY HIS MET PRO GLY ILE ILE TYR GLU GLY ....
Example 2.2. (with specified all position ID):
GLN -3 GLY -2 HIS -1 MET 0 PRO 1 GLY 2 ILE 3 ILE 4 TYR 5 .....
Example 2.3. (with specified first position ID):
GLN -3 GLY HIS MET PRO GLY ILE .....