A. Protein Sequence

A1. Fasta format.

The first line shoul start with '>' symbol.

Next one or more lines contain sequence in 1-letter code.

Example_A1:

 

> 

MDSKEVLVHVKNLEKNKSNDAAVLEILHVL

DKEFVPTE KLLRETKVGVE VNKFKKSTN

VEISKLVKKMISSWKDAIN   

 

A2. "Standard" format.

Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.

(only residue ID of the first residue is used to start numbering of the sequence positions).

Example_A2.1 (position ID is not specified)

 

GLN

GLY

HIS

MET

PRO

GLY

ILE

ILE

TYR

GLU

GLY

LYS

GLY

THR

ASN

MET

GLU

....

 

Example_A2.2 (with specified all position ID):

 

GLN   -3

GLY   -2

HIS    -1

MET   0

PRO   1

GLY    2

ILE      3

ILE      4

TYR     5

.....

 

Example_A2.3 (with specified first position ID):

 

GLN   -3

GLY 

HIS

MET  

PRO 

GLY 

ILE 

ILE 

TYR 

.....