Loading New Template in CARA

Loading a New Template

To start a new structure determination project in CARA you need to load a template.

For details see here: http://www.cara.ethz.ch/Wiki/ImportingTemplate

Default Template

For conventional NMR spectroscopy you can use the latest default template from the CARA web-site http://www.cara.ethz.ch/Wiki/TemplatesPage

The template can be opened by clicking File -> Open

GFT Template

• [[Media:BoR54_template.cara][BoR54_template.cara]]: Latest GFT template for BoR54 project
• Key modifications are:
• Residue type definitions
  • Added linker residue definitions to facilitate treatment of homodimers
• Spectrum type definitions
  • Added definitions of (4,3)D HNNCABCA, (4,3)D CABCA(CO)NHN and (4,3)D HABCAB(CO)NHN
• Spectrum attributes
  • Added attributes for GFT spectra - used by Lua scripts
• Lua scripts
  • CreateConsensusPeaklist - consensus peaklist from two loaded peak lists
  • CreateSequentialSpinLinks
  • ExportSeqToAutostructure - prepare sequence in Autostructure format
  • ExportToMain.AutoAssign - generate all files for AutoAssign input
  • ExportToMain.CSI - generate CSI input file
  • GFT_aroHCCH_calc - small applet too calculate aromatic side-chain spin in (4,3)D HCCH-COSY
  • GFT_HCCH_calc - small applet too calculate aliphatic side-chain spin in (4,3)D HCCH-COSY
  • GFT_CABCA2CACB - calculate CA and CB from sum and difference shifts
  • ImportCyana2xPeakList - import peaklist in CYANA 2.x format (with multiple assignments)
  • ImportSparkyPeakList - import peaklist in Sparky format (from AutoStructure)
  • ImportFromMain.AutoAssign - read assignments produced by AutoAssign
  • and more... (I'll expand the list if I get time - AlexEletski)

Template from a Previous Repository

Alternatively, you can click File -> New from template... to open an existing template or repository as a template. This would discard any projects existing in the repository.

-- Main.AlexEletski - 07 Mar 2007