A. Protein Sequence: Difference between revisions
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The first line shoul start with '>' symbol. | The first line shoul start with '>' symbol. | ||
Next one or more lines contain sequence in 1-letter code. | Next one or more lines contain sequence in 1-letter code. | ||
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<div><font size="2">Example_A1:</font></div><div> </div><div><font size="2">> </font></div><div><font size="2">MDSKEVLVHVKNLEKNKSNDAAVLEILHVL</font></div><div><font size="2">DKEFVPTE KLLRETKVGVE VNKFKKSTN</font></div><div><font size="2">VEISKLVKKMISSWKDAIN<span> </span></font></div><div> </div> | <div><font size="2">Example_A1:</font></div><div> </div><div><font size="2">> </font></div><div><font size="2">MDSKEVLVHVKNLEKNKSNDAAVLEILHVL</font></div><div><font size="2">DKEFVPTE KLLRETKVGVE VNKFKKSTN</font></div><div><font size="2">VEISKLVKKMISSWKDAIN<span> </span></font></div><div> </div> | ||
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<br>'''A2. "Standard" format.''' | |||
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID. | |||
(only residue ID of the first residue is used to start numbering of the sequence positions). | |||
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<div><font size="2">Example_A2.1 (position ID is not specified)</font></div><div> </div><div><font size="2">GLN</font></div><div><font size="2">GLY</font></div><div><font size="2">HIS</font></div><div><font size="2">MET</font></div><div><font size="2">PRO</font></div><div><font size="2">GLY</font></div><div><font size="2">ILE</font></div><div><font size="2">ILE</font></div><div><font size="2">TYR</font></div><div><font size="2">GLU</font></div><div><font size="2">GLY</font></div><div><font size="2">LYS</font></div><div><font size="2">GLY</font></div><div><font size="2">THR</font></div><div><font size="2">ASN</font></div><div><font size="2">MET</font></div><div><font size="2">GLU</font></div><div><font size="2">....</font></div><div> </div><div><font size="2">Example_A2.2 (with specified all position ID):</font></div><div> </div><div><font size="2">GLN -3</font></div><div><font size="2">GLY -2</font></div><div><font size="2">HIS -1</font></div><div><font size="2">MET <span> 0</span></font></div><div><font size="2">PRO<span> 1</span></font></div><div><font size="2">GLY <span> 2</span></font></div><div><font size="2">ILE<span> 3</span></font></div><div><font size="2">ILE<span> 4</span></font></div><div><font size="2">TYR 5</font></div><div><font size="2">.....</font></div><div> </div><div><font size="2">Example_A2.3 (with specified first position ID):</font></div><div> </div><div><font size="2">GLN -3</font></div><div><font size="2">GLY </font></div><div><font size="2">HIS</font></div><div><font size="2">MET<span> </span></font></div><div><font size="2">PRO </font></div><div><font size="2">GLY </font></div><div><font size="2">ILE </font></div><div><font size="2">ILE </font></div><div><font size="2">TYR </font></div><div><font size="2">.....</font></div> | <div><font size="2">Example_A2.1 (position ID is not specified)</font></div><div> </div><div><font size="2">GLN</font></div><div><font size="2">GLY</font></div><div><font size="2">HIS</font></div><div><font size="2">MET</font></div><div><font size="2">PRO</font></div><div><font size="2">GLY</font></div><div><font size="2">ILE</font></div><div><font size="2">ILE</font></div><div><font size="2">TYR</font></div><div><font size="2">GLU</font></div><div><font size="2">GLY</font></div><div><font size="2">LYS</font></div><div><font size="2">GLY</font></div><div><font size="2">THR</font></div><div><font size="2">ASN</font></div><div><font size="2">MET</font></div><div><font size="2">GLU</font></div><div><font size="2">....</font></div><div> </div><div><font size="2">Example_A2.2 (with specified all position ID):</font></div><div> </div><div><font size="2">GLN -3</font></div><div><font size="2">GLY -2</font></div><div><font size="2">HIS -1</font></div><div><font size="2">MET <span> 0</span></font></div><div><font size="2">PRO<span> 1</span></font></div><div><font size="2">GLY <span> 2</span></font></div><div><font size="2">ILE<span> 3</span></font></div><div><font size="2">ILE<span> 4</span></font></div><div><font size="2">TYR 5</font></div><div><font size="2">.....</font></div><div> </div><div><font size="2">Example_A2.3 (with specified first position ID):</font></div><div> </div><div><font size="2">GLN -3</font></div><div><font size="2">GLY </font></div><div><font size="2">HIS</font></div><div><font size="2">MET<span> </span></font></div><div><font size="2">PRO </font></div><div><font size="2">GLY </font></div><div><font size="2">ILE </font></div><div><font size="2">ILE </font></div><div><font size="2">TYR </font></div><div><font size="2">.....</font></div> | ||
Latest revision as of 23:49, 25 November 2009
A1. Fasta format.
The first line shoul start with '>' symbol.
Next one or more lines contain sequence in 1-letter code.
Example_A1:
>
MDSKEVLVHVKNLEKNKSNDAAVLEILHVL
DKEFVPTE KLLRETKVGVE VNKFKKSTN
VEISKLVKKMISSWKDAIN
A2. "Standard" format.
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.
(only residue ID of the first residue is used to start numbering of the sequence positions).
Example_A2.1 (position ID is not specified)
GLN
GLY
HIS
MET
PRO
GLY
ILE
ILE
TYR
GLU
GLY
LYS
GLY
THR
ASN
MET
GLU
....
Example_A2.2 (with specified all position ID):
GLN -3
GLY -2
HIS -1
MET 0
PRO 1
GLY 2
ILE 3
ILE 4
TYR 5
.....
Example_A2.3 (with specified first position ID):
GLN -3
GLY
HIS
MET
PRO
GLY
ILE
ILE
TYR
.....