Common NMR experiment sets: Difference between revisions

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== Arrowsmith group<br> ==
== Arrowsmith group ==


Data acquisition is taylored for [[Abacus|ABACUS]] approach for resonance assignment. Most 3D spectra collected with [[Setting_up_non-uniformly_sampled_spectra|Non-uniform sampling]] and processed with [[Processing_non-uniformly_sampled_spectra_with_Multidimensional_Decomposition|Multidimensional decomposition]],
Data acquisition is taylored for [[Abacus|ABACUS]] approach for resonance assignment. Most 3D spectra collected with [[Setting up non-uniformly sampled spectra|Non-uniform sampling]] and processed with [[Processing non-uniformly sampled spectra with Multidimensional Decomposition|Multidimensional decomposition]],  


*1D presaturation
*1D presaturation  
*1D 15N T1  
*1D 15N T1  
*1D 15N T2
*1D 15N T2
 
*2D [15N,1H]-HSQC  
*2D [15N,1H]-HSQC<br>
*2D [13C,1H]-HSQC aliphatic  
*2D [13C,1H]-HSQC aliphatic<br>
*2D [13C,1H]-HSQC aromatic  
*2D [13C,1H]-HSQC aromatic<br>
*2D [13C,1H]-CT-HSQC aliphatic  
*2D [13C,1H]-CT-HSQC aliphatic  
*2D [13C,1H]-CT-HSQC aromatic (optional)
*2D [13C,1H]-CT-HSQC aromatic (optional)  
*2D long-range [15N,1H]-HSQC or HMQC for histidine rings (optional)<br>
*2D long-range [15N,1H]-HSQC or HMQC for histidine rings (optional)
*2D&nbsp;HE(CECDCG)CB (optional)
*2D HE(CECDCG)CB (optional)
 
 


{!NH-rooted
!!CH-rooted
!!Aromatic
|-
|
*3D 15N-NOESY-HSQC
*3D HNCO
*3D HNCA
*3D CBCA(CO)NH
*3D HBHA(CO)NH
||
*3D (H)CCH-TOCSY  
*3D (H)CCH-TOCSY  
*3D 15N/13Cali/13Caro-resolved [1H,1H]-NOESY  
*3D H(C)CH-TOCSY
*3D&nbsp;HNCO
*3D 13C-NOESY-HSQC
*3D&nbsp;HN(CA)CO
||
*3D&nbsp;CBCA(CO)NH
*3D (H)CCH-TOCSY (optional)
*3D&nbsp;HNCACB
*3D H(C)CH-TOCSY (optional)
*3D HBHA(CO)NH
*3D 13C-NOESY-HSQC
*

Revision as of 21:39, 23 December 2009

Szyperski group

The following experiments are recorded for NC samples

Common experiments

  • 1D
  • 1D 15N T1
  • 1D 15N T2
  • 2D [15N,1H]-HSQC
  • 2D [15N,1H]-HSQC with wide spectral width in 15N (optional)
  • 2D [13C,1H]-HSQC aliphatic
  • 2D [13C,1H]-HSQC aromatic (optional)
  • 2D [13C,1H]-CT-HSQC aliphatic
  • 2D [13C,1H]-CT-HSQC aromatic
  • 2D long-range [15N,1H]-HSQC or HMQC for histidine rings (optional)
  • 3D HN(CA)CO (optional)
  • 3D (H)CCH-TOCSY
  • 2D HE(CECDCG)CB (optional)
  • 3D 15N/13Cali/13Caro-resolved [1H,1H]-NOESY


GFT protocol

  • (3,2)D GFT HNNCO or 3D HNCO
  • (4,3)D GFT CABCA(CO)NH
  • (4,3)D GFT HNCABCA
  • (4,3)D GFT HABCAB(CO)NH
  • (4,3)D GFT HCCH aliphatic
  • (4,3)D GFT HCCH-COSY aromatic


Conventional protocol

  • 3D HNCO
  • 3D HN(CA)CO
  • 3D CBCA(CO)NH
  • 3D HNCACB
  • 3D HBHA(CO)NH
  • (H)CCH-COSY aliphatic
  • (H)CCH-COSY aromatic


Fractionally 13C-labeled samples

  • 2D [13C,1H]-CT-HSQC, 28ms delay - optimized for methyl groups
  • 2D [13C,1H]-CT-HSQC, 56ms delay (optional)
  • 2D [13C,1H]-CT-HSQC, 42ms delay (optional)
  • 2D long-range [15N,1H]-HSQC or HMQC for histidine rings (optional - can also be run for the NC sample)


Arrowsmith group

Data acquisition is taylored for ABACUS approach for resonance assignment. Most 3D spectra collected with Non-uniform sampling and processed with Multidimensional decomposition,

  • 1D presaturation
  • 1D 15N T1
  • 1D 15N T2
  • 2D [15N,1H]-HSQC
  • 2D [13C,1H]-HSQC aliphatic
  • 2D [13C,1H]-HSQC aromatic
  • 2D [13C,1H]-CT-HSQC aliphatic
  • 2D [13C,1H]-CT-HSQC aromatic (optional)
  • 2D long-range [15N,1H]-HSQC or HMQC for histidine rings (optional)
  • 2D HE(CECDCG)CB (optional)

{!NH-rooted !!CH-rooted !!Aromatic |- |

  • 3D 15N-NOESY-HSQC
  • 3D HNCO
  • 3D HNCA
  • 3D CBCA(CO)NH
  • 3D HBHA(CO)NH

||

  • 3D (H)CCH-TOCSY
  • 3D H(C)CH-TOCSY
  • 3D 13C-NOESY-HSQC

||

  • 3D (H)CCH-TOCSY (optional)
  • 3D H(C)CH-TOCSY (optional)
  • 3D 13C-NOESY-HSQC