Loading New Template in CARA: Difference between revisions

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==== GFT Template  ====
==== GFT Template  ====


*[[Media:BoR54_template.cara][BoR54_template.cara]]: Latest GFT template for BoR54 project  
*[[Media:BoR54_template.cara|BoR54_template.cara]]: Latest GFT template for BoR54 project  
*Key modifications are:  
*Key modifications are:  
*Residue type definitions  
*Residue type definitions  

Revision as of 19:38, 6 November 2009

Loading a New Template

To start a new structure determination project in CARA you need to load a template.

For details see here: http://www.cara.ethz.ch/Wiki/ImportingTemplate

Default Template

For conventional NMR spectroscopy you can use the latest default template from the CARA web-site http://www.cara.ethz.ch/Wiki/TemplatesPage

The template can be opened by clicking File -> Open


CARA New Template Dialogue.png

GFT Template

  • BoR54_template.cara: Latest GFT template for BoR54 project
  • Key modifications are:
  • Residue type definitions
    • Added linker residue definitions to facilitate treatment of homodimers
  • Spectrum type definitions
    • Added definitions of (4,3)D HNNCABCA, (4,3)D CABCA(CO)NHN and (4,3)D HABCAB(CO)NHN
  • Spectrum attributes
    • Added attributes for GFT spectra - used by Lua scripts
  • Lua scripts
    • CreateConsensusPeaklist - consensus peaklist from two loaded peak lists
    • CreateSequentialSpinLinks
    • ExportSeqToAutostructure - prepare sequence in Autostructure format
    • ExportToMain.AutoAssign - generate all files for AutoAssign input
    • ExportToMain.CSI - generate CSI input file
    • GFT_aroHCCH_calc - small applet too calculate aromatic side-chain spin in (4,3)D HCCH-COSY
    • GFT_HCCH_calc - small applet too calculate aliphatic side-chain spin in (4,3)D HCCH-COSY
    • GFT_CABCA2CACB - calculate CA and CB from sum and difference shifts
    • ImportCyana2xPeakList - import peaklist in CYANA 2.x format (with multiple assignments)
    • ImportSparkyPeakList - import peaklist in Sparky format (from AutoStructure)
    • ImportFromMain.AutoAssign - read assignments produced by AutoAssign
    • and more... (I'll expand the list if I get time - AlexEletski)

Template from a Previous Repository

Alternatively, you can click File -> New from template... to open an existing template or repository as a template. This would discard any projects existing in the repository.

-- Main.AlexEletski - 07 Mar 2007