Resonance Assignment/Abacus/Protein Sequence format: Difference between revisions

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A1. Fasta format.  
1. Fasta format.  


The first line shoul start with '>' symbol.  
The first line shoul start with '>' symbol.  


Next one or more lines contain sequence in 1-letter code.  
Next one or more lines contain sequence in 1-letter code.  


<br>


<br>


<br>


Example 1:


&gt; MDSKEVLVHVKNLEKNKSNDAAVLEILHVL DKEFVPTE KLLRETKVGVE VNKFKKSTN VEISKLVKKMISSWKDAIN


<br>


Example_A1:
<br>
>  
MDSKEVLVHVKNLEKNKSNDAAVLEILHVL
DKEFVPTE KLLRETKVGVE VNKFKKSTN
VEISKLVKKMISSWKDAIN   
 


<br>


2. "Standard" format.


Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.


(only residue ID of the first residue is used to start numbering of the sequence positions).


<br>


A2. "Standard" format.
<br>
 
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.
 
(only residue ID of the first residue is used to start numbering of the sequence positions).


<br>


Example 2.1 (position ID is not specified)


GLN GLY HIS MET PRO GLY ILE ILE TYR GLU GLY LYS GLY THR ASN MET GLU ....


Example 2.2 (with specified all position ID):


GLN -3 GLY -2 HIS -1 MET 0 PRO 1 GLY 2 ILE 3 ILE 4 TYR 5 .....


Example 2.3 (with specified first position ID):


Example_A2.1 (position ID is not specified)
GLN -3 GLY HIS MET PRO GLY ILE ILE TYR .....
GLN
GLY
HIS
MET
PRO
GLY
ILE
ILE
TYR
GLU
GLY
LYS
GLY
THR
ASN
MET
GLU
....
Example_A2.2 (with specified all position ID):
GLN  -3
GLY  -2
HIS    -1
MET  0
PRO  1
GLY    2
ILE      3
ILE      4
TYR    5
.....
Example_A2.3 (with specified first position ID):
GLN  -3
GLY  
HIS
MET  
PRO  
GLY  
ILE  
ILE  
TYR  
.....

Revision as of 18:55, 26 November 2009

1. Fasta format.

The first line shoul start with '>' symbol.

Next one or more lines contain sequence in 1-letter code.




Example 1:

> MDSKEVLVHVKNLEKNKSNDAAVLEILHVL DKEFVPTE KLLRETKVGVE VNKFKKSTN VEISKLVKKMISSWKDAIN




2. "Standard" format.

Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.

(only residue ID of the first residue is used to start numbering of the sequence positions).




Example 2.1 (position ID is not specified)

GLN GLY HIS MET PRO GLY ILE ILE TYR GLU GLY LYS GLY THR ASN MET GLU ....

Example 2.2 (with specified all position ID):

GLN -3 GLY -2 HIS -1 MET 0 PRO 1 GLY 2 ILE 3 ILE 4 TYR 5 .....

Example 2.3 (with specified first position ID):

GLN -3 GLY HIS MET PRO GLY ILE ILE TYR .....

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