Resonance Assignment/Abacus/Protein Sequence format: Difference between revisions
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1. Fasta format. | '''1. Fasta format.''' | ||
The first line shoul start with '>' symbol. | The first line shoul start with '>' symbol. | ||
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Next one or more lines contain sequence in 1-letter code. | Next one or more lines contain sequence in 1-letter code. | ||
>MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE | ''Example 1:<br>'' | ||
<pre>> | |||
MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE | |||
KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD </pre> | |||
'''2. "Standard" format.''' | |||
2. "Standard" format. | |||
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID. | Each line contains name of one residue in 3-lettr code and, optionally, the residue ID. | ||
| Line 26: | Line 19: | ||
(only residue ID of the first residue is used to start numbering of the sequence positions). | (only residue ID of the first residue is used to start numbering of the sequence positions). | ||
''Example 2.1'' (position ID is not specified): | |||
<pre>GLN | |||
GLY | |||
HIS | |||
MET | |||
PRO | |||
GLY | |||
ILE | |||
ILE | |||
TYR | |||
GLU | |||
GLY | |||
.... </pre> | |||
GLN GLY HIS MET PRO GLY ILE ILE TYR GLU GLY LYS GLY THR ASN MET GLU .... | GLN GLY HIS MET PRO GLY ILE ILE TYR GLU GLY LYS GLY THR ASN MET GLU .... | ||
Revision as of 21:50, 26 November 2009
1. Fasta format.
The first line shoul start with '>' symbol.
Next one or more lines contain sequence in 1-letter code.
Example 1:
> MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD
2. "Standard" format.
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.
(only residue ID of the first residue is used to start numbering of the sequence positions).
Example 2.1 (position ID is not specified):
GLN GLY HIS MET PRO GLY ILE ILE TYR GLU GLY ....
GLN GLY HIS MET PRO GLY ILE ILE TYR GLU GLY LYS GLY THR ASN MET GLU ....
Example 2.2 (with specified all position ID):
GLN -3 GLY -2 HIS -1 MET 0 PRO 1 GLY 2 ILE 3 ILE 4 TYR 5 .....
Example 2.3 (with specified first position ID):
GLN -3 GLY HIS MET PRO GLY ILE ILE TYR .....