Resonance Assignment/Abacus/Protein Sequence format: Difference between revisions
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'''1. Fasta format.''' | '''1. Fasta format.''' | ||
The first line shoul start with '>' symbol. | The first line shoul start with '>' symbol. | ||
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Next one or more lines contain sequence in 1-letter code. | Next one or more lines contain sequence in 1-letter code. | ||
<br> | |||
''Example 1:<br>'' | ''Example 1:<br>'' | ||
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MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE | MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE | ||
KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD </pre> | KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD </pre> | ||
<br>'''2. "Standard" format.''' | |||
'''2. "Standard" format.''' | |||
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID. | Each line contains name of one residue in 3-lettr code and, optionally, the residue ID. | ||
| Line 19: | Line 17: | ||
(only residue ID of the first residue is used to start numbering of the sequence positions). | (only residue ID of the first residue is used to start numbering of the sequence positions). | ||
<br> | |||
''Example 2.1'' (position ID is not specified): | |||
''Example 2.1'' (position ID is not specified): | |||
<pre>GLN | <pre>GLN | ||
GLY | GLY | ||
| Line 34: | Line 32: | ||
GLY | GLY | ||
.... </pre> | .... </pre> | ||
''Example 2.2'' (with specified all position ID): | |||
<pre>GLN -3 | |||
Example 2.2 (with specified all position ID): | GLY -2 | ||
HIS -1 | |||
GLN -3 GLY -2 HIS -1 MET 0 PRO 1 GLY 2 ILE 3 ILE 4 TYR 5 ..... | MET 0 | ||
PRO 1 | |||
Example 2.3 (with specified first position ID): | GLY 2 | ||
ILE 3 | |||
GLN -3 GLY HIS MET PRO GLY ILE | ILE 4 | ||
TYR 5 | |||
..... </pre> | |||
''Example 2.3'' (with specified first position ID): | |||
<pre>GLN -3 | |||
GLY | |||
HIS | |||
MET | |||
PRO | |||
GLY | |||
ILE | |||
.....</pre> | |||
Revision as of 22:18, 26 November 2009
1. Fasta format.
The first line shoul start with '>' symbol.
Next one or more lines contain sequence in 1-letter code.
Example 1:
> MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD
2. "Standard" format.
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.
(only residue ID of the first residue is used to start numbering of the sequence positions).
Example 2.1 (position ID is not specified):
GLN GLY HIS MET PRO GLY ILE ILE TYR GLU GLY ....
Example 2.2 (with specified all position ID):
GLN -3 GLY -2 HIS -1 MET 0 PRO 1 GLY 2 ILE 3 ILE 4 TYR 5 .....
Example 2.3 (with specified first position ID):
GLN -3 GLY HIS MET PRO GLY ILE .....