Resonance Assignment/Abacus/Protein Sequence format: Difference between revisions
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Each line contains name of one residue in 3-lettr code and, optionally, the residue ID. | Each line contains name of one residue in 3-lettr code and, optionally, the residue ID. | ||
( | (Only residue ID of the first residue of the [[FMCGUI_objects#Protein_Sequence|sequence]] is used to start numbering of the sequence positions). | ||
<br> | <br> | ||
''Example 2.1.'' (position ID is not specified): | ''Example 2.1.'' (position ID is not specified): | ||
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GLU | GLU | ||
GLY | GLY | ||
.... </pre> | .... </pre> | ||
''Example 2.2.'' (with specified all position ID): | ''Example 2.2.'' (with specified all position ID): | ||
<pre>GLN -3 | <pre>GLN -3 | ||
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ILE 4 | ILE 4 | ||
TYR 5 | TYR 5 | ||
..... </pre> | ..... </pre> | ||
''Example 2.3.'' (with specified first position ID): | ''Example 2.3.'' (with specified first position ID): | ||
<pre>GLN -3 | <pre>GLN -3 | ||
Revision as of 23:05, 30 November 2009
1. Fasta format.
The first line shoul start with '>' symbol.
Next one or more lines contain sequence in 1-letter code.
Example 1.1:
> MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD
2. "Standard" format.
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.
(Only residue ID of the first residue of the sequence is used to start numbering of the sequence positions).
Example 2.1. (position ID is not specified):
GLN GLY HIS MET PRO GLY ILE ILE TYR GLU GLY ....
Example 2.2. (with specified all position ID):
GLN -3 GLY -2 HIS -1 MET 0 PRO 1 GLY 2 ILE 3 ILE 4 TYR 5 .....
Example 2.3. (with specified first position ID):
GLN -3 GLY HIS MET PRO GLY ILE .....