Resonance Assignment/Abacus/Protein Sequence format: Difference between revisions

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== '''1. Fasta format.'''  ==
== '''1. Fasta format.'''  ==


The first line shoul start with '>' symbol.  
The first line should start with '>' symbol.  


Next one or more lines contain sequence in 1-letter code.  
Next one or more lines contain sequence in 1-letter code.  


<br>
<br>  


''Example 1.1:<br>''
''Example 1.1:<br>''  
<pre>&gt;
<pre>&gt;
MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE
MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE
KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD </pre>
KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD </pre>
== <br>'''2. "Standard" format.'''  ==
== <br>'''2. "Standard" format.'''  ==



Revision as of 21:14, 15 December 2009

1. Fasta format.

The first line should start with '>' symbol.

Next one or more lines contain sequence in 1-letter code.


Example 1.1:

>
MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE
KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD 


2. "Standard" format.

Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.

(Only residue ID of the first residue is used to start numbering of sequence positions.


Example 2.1. (position ID is not specified):

GLN 
GLY 
HIS 
MET 
PRO 
GLY 
ILE 
ILE 
TYR 
GLU 
GLY 
.... 

Example 2.2. (with specified all position ID):

GLN  -3
GLY  -2 
HIS  -1 
MET   0 
PRO   1 
GLY   2 
ILE   3 
ILE   4 
TYR   5 
..... 

Example 2.3. (with specified first position ID):

GLN  -3
GLY  
HIS
MET
PRO
GLY
ILE
.....