Resonance Assignment/Abacus/Protein Sequence format: Difference between revisions

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A1. Fasta format.
__TOC__


The first line shoul start with '>' symbol.  
== '''1. Fasta format.'''  ==
 
The first line should start with '>' symbol.  


Next one or more lines contain sequence in 1-letter code.  
Next one or more lines contain sequence in 1-letter code.  


<br>


''Example 1.1:<br>''
<pre>&gt;
MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE
KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD </pre>


== <br>'''2. "Standard" format.'''  ==


Each line contains name of one residue in 3-letter code and, optionally, the residue ID.


(Only residue ID of the first residue is used to start [[FMCGUI objects#Protein_sequence|numbering of sequence positions]].


<br>


Example_A1:
''Example 2.1.'' (position ID is not specified):  
<pre>GLN  
>
MDSKEVLVHVKNLEKNKSNDAAVLEILHVL
DKEFVPTE KLLRETKVGVE VNKFKKSTN
VEISKLVKKMISSWKDAIN   
 
 
 
 
 
 
 
A2. "Standard" format.
 
Each line contains name of one residue in 3-lettr code and, optionally, the residue ID.
 
(only residue ID of the first residue is used to start numbering of the sequence positions).  
 
 
 
 
 
 
 
Example_A2.1 (position ID is not specified)
GLN
GLY
HIS
MET
PRO
GLY
ILE
ILE
TYR
GLU
GLY
LYS
GLY
THR
ASN
MET
GLU
....
Example_A2.2 (with specified all position ID):
GLN  -3
GLY  -2
HIS    -1
MET  0
PRO  1
GLY    2
ILE      3
ILE      4
TYR    5
.....
Example_A2.3 (with specified first position ID):
GLN   -3
GLY  
GLY  
HIS
HIS  
MET  
MET  
PRO  
PRO  
GLY  
GLY  
Line 82: Line 32:
ILE  
ILE  
TYR  
TYR  
.....
GLU
GLY
.... </pre>
''Example 2.2.'' (with specified all position ID):
<pre>GLN  -3
GLY  -2
HIS  -1
MET  0
PRO  1
GLY  2
ILE  3
ILE  4
TYR  5
..... </pre>
''Example 2.3.'' (with specified first position ID):
<pre>GLN  -3
GLY 
HIS
MET
PRO
GLY
ILE
.....</pre>

Latest revision as of 23:34, 5 January 2010

1. Fasta format.

The first line should start with '>' symbol.

Next one or more lines contain sequence in 1-letter code.


Example 1.1:
 

>
MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE
KLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD


2. "Standard" format.

Each line contains name of one residue in 3-letter code and, optionally, the residue ID.

(Only residue ID of the first residue is used to start numbering of sequence positions.


Example 2.1. (position ID is not specified): 

GLN 
GLY 
HIS 
MET 
PRO 
GLY 
ILE 
ILE 
TYR 
GLU 
GLY 
....

Example 2.2. (with specified all position ID): 

GLN  -3
GLY  -2 
HIS  -1 
MET   0 
PRO   1 
GLY   2 
ILE   3 
ILE   4 
TYR   5 
.....

Example 2.3. (with specified first position ID): 

GLN  -3
GLY  
HIS
MET
PRO
GLY
ILE
.....
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