Spectra Format Conversion from NMRPipe Data: Difference between revisions

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::::pipe2ucsf 3D_HNCO.mat 3D_HNCO.ucsf
::::pipe2ucsf 3D_HNCO.mat 3D_HNCO.ucsf
:Additional information can be found in [http://www.cgl.ucsf.edu/home/sparky/manual/index.html Sparky Manual]


===== NMRPipe to CARA  =====
===== NMRPipe to CARA  =====

Revision as of 20:25, 7 December 2009

Spectra Format Conversion from NMRPipe Processed Data


NMRPipe to Sparky
Type the following command in the UNIX terminal
For a 2D dataset 'gnhsqc.ft2' (Routine Processing Procedure for 2D Experiment)
pipe2ucsf gnhsqc.ft2 gnhsqc.ucsf
For a 3D dataset (Routine Processing Procedure for 3D 15N and 13C-edited Experiments)
Use xyz2pipe to combine 2D planes into one single PIPE file (Go to the directory where the 3D planes are stored)
xyz2pipe -in test%03d.ft3 -x > 3D_HNCO.mat
Convert the single PIPE file to UCSF format
pipe2ucsf 3D_HNCO.mat 3D_HNCO.ucsf
Additional information can be found in Sparky Manual
NMRPipe to CARA

NMRPipe to XEASY
NMRPipe to NMRViewJ
At the end of the processing script (e.g. ft2d.com or nmrproc.com), insert the following two lines:
For 2D dataset (Routine Processing Procedure for 2D Experiment)
nmrPipe -in gnhsqc.ft2 \
|pipe2xyz -nv -out filename.nv
For a 3D dataset (Routine Processing Procedure for 3D 15N and 13C-edited Experiments)
xyz2pipe -in lp/test%03d.ft3 -x \
|pipe2xyz -nv -out filename.nv