Target selection: Difference between revisions
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As part of the NIH funded PSI-2 project, the NESG dedicates 70% of its resources to the determination of targeted families assigned by the [http://psi-big4.org PSI BIG group], <br>30% to targets nominated by the | <br>As part of the NIH funded PSI-2 project, the NESG dedicates 70% of its resources to the determination of targeted families assigned by the [http://psi-big4.org PSI BIG group], <br>30% to targets nominated by the <!--[if gte mso 10]> | ||
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<![endif]--><span | <![endif]--><span>academic</span> community and 30% to its own <span>biomedicaly</span> oriented projects such as key proteins in Human cancer interaction<br>networks and bacterial lipoproteins. | ||
Throughout PSI-2, protein families proposed by the PSI BIG group have been selected by the PSI-2 large scale centers via a lottery system overseen by the <br>PSI BIG group. Members of protein families selected by the BIG group are studied by the large scale centers prior to family selection and each center proposes<br>families that they wish to pursue. The PSI BIG group | Throughout PSI-2, protein families proposed by the PSI BIG group have been selected by the PSI-2 large scale centers via a lottery system overseen by the <br>PSI BIG group. Members of protein families selected by the BIG group are studied by the large scale centers prior to family selection and each center proposes<br>families that they wish to pursue. The PSI BIG group <!--[if gte mso 10]> | ||
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<![endif]--><span | <![endif]--><span>resolves</span> conflicts where more than one large scale center <!--[if gte mso 10]> | ||
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<![endif]--><span | <![endif]--><span>proposes</span> the same protein family. | ||
Before selecting a protein family, the NESG evaluates family members with a number of | Before selecting a protein family, the NESG evaluates family members with a number of <!--[if gte mso 10]> | ||
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<![endif]--><span | <![endif]--><span>predictors</span>: | ||
*[http://nmr.cabm.rutgers.edu:8080/PXS/calculatePXS.jsp Pxs] | *[http://nmr.cabm.rutgers.edu:8080/PXS/calculatePXS.jsp Pxs] | ||
Revision as of 17:10, 1 December 2009
As part of the NIH funded PSI-2 project, the NESG dedicates 70% of its resources to the determination of targeted families assigned by the PSI BIG group,
30% to targets nominated by the academic community and 30% to its own biomedicaly oriented projects such as key proteins in Human cancer interaction
networks and bacterial lipoproteins.
Throughout PSI-2, protein families proposed by the PSI BIG group have been selected by the PSI-2 large scale centers via a lottery system overseen by the
PSI BIG group. Members of protein families selected by the BIG group are studied by the large scale centers prior to family selection and each center proposes
families that they wish to pursue. The PSI BIG group resolves conflicts where more than one large scale center proposes the same protein family.
Before selecting a protein family, the NESG evaluates family members with a number of predictors:
Result of PSI-2 protein family drafts:
- Draft pick of 1369 Pfam families (Oct 2005)
- Draft pick of 397 BIG families (Apr 2006)
- Draft pick of 460 BIG families (Aug 2006)
- Draft pick of 602 BIG families (Nov 2006)
- Selection of 3 small MEGA families (March 2007)
- First round draft pick of p-loop super MEGA (May 2007)
- Second round draft pick of p-loop super MEGA (June 2007)
- First round META genome draft pick (June 2007)
- Selection of 4 small MEGA families (June 2007)
- Draft selection of 4 mid size MEGA families (Dec 2007)
- [1]Draft pick of NAD(P)-binding Rossmann domain (Dec 2007)
- Draft pick of Aldolase Class I (Dec 2007)
- Draft pick of VP39 (Dec 2007)
- Draft pick of 1000 MEGA modeling families (250/center) (May 2008)
- Draft pick of 136 META HMM families (34/center) (July 2008)
- Draft pick of 1000 MEGA modeling families (250/center) (July 2008)