Resonance Assignment

Resonance Assignment

This chapter focuses on data analysis and resonance assignment packages, as most people stick to a particular software for entire structure determination projects.

1. Principles and concepts
2. Practical aspects
   1. Semi-automated protocols
      1. CARA
         1. Spin System Identification in 2D 15N-HSQC and 3D HNNCO
         2. Backbone Resonance Assignment
         3. Assignment of HA and HB Resonances with (4,3)D GFT HABCAB(CO)NHN
         4. Side Chain Assignment
            1. Aliphatic side-chain assignment
            2. Aromatic side-chain assignment
            3. Amide side-chain assignment
      2. Sparky
      3. XEASY
         1. Spin system identification
         2. Backbone resonance assignment
            
            1. GFT-based spectra
               1. HNCACAB/CABCA(CO)NH
            2. Conventional spectra
               1. HNCACB/CBCA(CO)NH
               2. HNCA/HN(CO)CA
               3. HNCO/HN(CA)CO
               4. NOESY/TOCSY
         3. Side chain resonance assignment
            1. Aliphatic
               1. GFT NMR spectra
                  1. (4,3)D GFT HABCAB(CO)NHN
                  2. (4,3)D GFT HCCH
               2. Conventional spectra
                  1. HAHB(CO)NH
                  2. HCCH-COSY
                  3. HCCH-TOCSY
                  4. Simultaneous NOESY
                  5. (H)CC-TOCSY-(CO)NH
                  6. H(CC-TOCSY-CO)NH
            2. Aromatic
               1. GFT-based spectra
               2. Conventional spectra
            3. Other
               1. Trp e1 NH and d1 CH
               2. Met e CH3
               3. Asn d2 and Gln e2 NH2
            4. NOESY peak integration
   2. Automated protocols
      1. AutoAssign
      2. AutoAssign server
      3. ABACUS
      4. PINE server
   3. Validation of resonance assignment
      1. Assignment validation suite (AVS)
      2. Linear analysis of chemical shift (LACS)
   4. Depositing chemical shifts